BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0129.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 135 9e-32 AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 124 3e-28 PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 119 6e-27 RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 101 2e-21 BS_yvbU [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 97 4e-20 mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 91 3e-18 SA2330 [K] COG0583 Transcriptional regulator Sau Staphylococcus ... 91 3e-18 AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 89 1e-17 sll1594 [K] COG0583 Transcriptional regulator Syn Synechocystis 89 2e-17 VC1617 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 87 4e-17 >PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 311 Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 141/261 (54%), Gaps = 1/261 (0%) Query: 5 QLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSA 64 +L AL Y EV+ GS+ A+Q LN+ SAISRQ++SLE+ L L +R P+G+ + Sbjct: 3 RLSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTE 62 Query: 65 GGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPG 124 GE+L AH R+ + V++ L AL+GLR G+VRL+ EGF D + + + +F +YPG Sbjct: 63 AGELLVAHYRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPG 122 Query: 125 FVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFR 184 ++ + V+E D+ L +A + + E+ V P+ LI+ +H LA R Sbjct: 123 IELEVRMAGANEGVALVKEDAVDLALVYAPVEDGELDVHVDTRQPLDLIIPANHALAGHR 182 Query: 185 -QISVGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDALS 243 + + L+ +AL +T + QL IA +++ + P + +N + L N+V ++ Sbjct: 183 GAVPMRALRNESLALIHNSTGMGQLAVIAAQLERIELRPKLRTNSVAVLTNFVKSGIGVA 242 Query: 244 ITGEVTVRYRIATGELTMRPI 264 E+TV + I G + P+ Sbjct: 243 FMPELTVSHEIEAGHIRCLPL 263 >AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 134/259 (51%) Query: 6 LQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAG 65 +Q AL YF E+VR S+ A++ LNVA +A+SRQI +LE + L ER RG+ L+A Sbjct: 33 MQLRALMYFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLTAA 92 Query: 66 GEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGF 125 GE+LAA A K E D V + LKGL+ GRV + A+ + L ++ F KYP Sbjct: 93 GELLAARAGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYPKL 152 Query: 126 VFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQ 185 F++ + + + AD+ ++ +KV R +I H LA + Sbjct: 153 RFEVHITSARQAMEALGAAEADLVVSLFAPKLSGVKVRSRTRISYDVIFPAGHALAAQPE 212 Query: 186 ISVGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDALSIT 245 +S+ +L P+ALPD + RQ FD + + ++PV ++ ++ L VL N A ++ Sbjct: 213 VSLKELAGMPLALPDKSFAARQAFDTLFADAGIELDPVFITSSLEMLKELVLGNAAATLL 272 Query: 246 GEVTVRYRIATGELTMRPI 264 ++V I +G++ P+ Sbjct: 273 PALSVAREIRSGQMVAVPL 291 >PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 313 Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 8/289 (2%) Query: 5 QLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSA 64 + A+ YF V RC SI EA++RLNVASSA++RQI LE + LF+R P G+ L+ Sbjct: 6 HIHAPAIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTG 65 Query: 65 GGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPG 124 GE+ A H + + +RV ++L AL+GLR+G V ++ E D LP ++ A +++YP Sbjct: 66 AGEIFARHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPD 125 Query: 125 FVFQLFVGAPALVSRQVREGNADIGLTFARLPEP----EIKVVHRQPGPIALIMRKDHPL 180 + + + V G D+GL FA LP ++ V H + G I+ HPL Sbjct: 126 ITVGVTLLGSQAIPEAVSSGAVDLGLAFA-LPRSADLQQVSVGHFRLGA---IVSPQHPL 181 Query: 181 ARFRQISVGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 AR + I+ + + + ++ L R + V+ S+ ++ Sbjct: 182 ARHQAIAFADCVEHGLIMAKSELSIHHLLAPLQRRLREPRRAVLESSSLELSRQLARRGL 241 Query: 241 ALSITGEVTVRYRIATGELTMRPIRDCPADGRFVEVQTLAGRTLPRSVE 289 ++ + + IA GEL P++D + + GR LP +V+ Sbjct: 242 GVAFQTRLGIEADIAQGELRFLPLKDNGGIHSDLGLYVRTGRYLPVAVD 290 >RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 324 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 1/291 (0%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 +R F ++ S+ +A+ +L ++ S +SR ++ +E ++ LF+R G++ + L Sbjct: 9 MRVFHAILEHRSVRKAADQLEMSRSLVSRYLTEMEDMIGGRLFDRTATGLMPTDAVPYLL 68 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 +AR M ++++ + L+ L+ G + +S SEG + ++ F KKYPG L Sbjct: 69 EYARGMEASQEKLLDQMHQLRSLQKGNLLISLSEGLVDTLMEDVLAGFMKKYPGVEVVLN 128 Query: 131 VGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQ-ISVG 189 + A A + V A IGL + I I + +HPLAR + + Sbjct: 129 MRATAEIINDVATNEAHIGLAYNPPMTSGIAFCASAVHHIVAAVHPEHPLARCDDPVPLA 188 Query: 190 QLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDALSITGEVT 249 Q YP+ + P L L + + + P +N + +L Y ++ + + Sbjct: 189 QALAYPVGIMPPAFGLGLLIRTIAKAENLNLTPNFNANTLMALRAYARHTRGVAFITDFS 248 Query: 250 VRYRIATGELTMRPIRDCPADGRFVEVQTLAGRTLPRSVEIFLDYLVAELS 300 +R +A G L P++ A+ ++ V GR LPR+ + ++ + A LS Sbjct: 249 IRKEVAAGLLVGVPLKHPLAENQYARVMVKEGRPLPRAAQEVINSINAHLS 299 >BS_yvbU [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 292 Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 3/193 (1%) Query: 9 TALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFER-RPRGMVLSAGGE 67 T L+ F+++ GS ++A Q LN+ A+S IS++E LD L R R G++L+ G+ Sbjct: 4 TQLKVFVKIAETGSFTKAGQALNMTQPAVSHAISAIEAELDVKLIIRDRRNGLMLTDTGK 63 Query: 68 MLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVF 127 + H R++ ++V A KGL G + + + F+P+LI+ F++KYP Sbjct: 64 QILVHIREVLKGIEKVEQVAAAEKGLELGTIHIGTFSTASAYFMPKLISEFKQKYPKLEL 123 Query: 128 QLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQIS 187 L G V + D+G+ P E++ +H + +A+++R DHPLA I+ Sbjct: 124 VLHEGTVNEVKEWLHTRMIDVGILL--YPTEEMEYIHLKKDKMAVVLRDDHPLASHSAIT 181 Query: 188 VGQLKPYPMALPD 200 + L PM + D Sbjct: 182 LKDLDHEPMIVCD 194 >mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 10/296 (3%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 LR FL VV S A++ L+++ A+SR+I LEQ + + ER R + +A G L Sbjct: 10 LRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSATALGIELV 69 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 R+M E D + ++ + R G V ++ A FLP +I F ++YP F++ Sbjct: 70 PLVRRMLEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYPNIRFRI- 128 Query: 131 VGAPALVSRQ-VREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQISVG 189 + PA Q V G + G+ +P++ P L R+DHPLA + Sbjct: 129 LDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLAAKPSVGWA 188 Query: 190 QLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDALSITGEVT 249 L+PY + ++ R L D A ++ + + ++ + + L L I+ V Sbjct: 189 DLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLST--SLGLVEAGLGIS--VL 244 Query: 250 VRYRIATGE---LTMRPIRDCPADGRFVEVQTLAGRTLPRSVEIFLDYLVAELSKD 302 R G+ L RPIRD P R + V G TL + E FL L+ + D Sbjct: 245 PRMATPGGDHPFLITRPIRD-PEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD 299 >SA2330 [K] COG0583 Transcriptional regulator Sau Staphylococcus aureus N315 Length = 295 Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 92/181 (50%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 ++YF+EVV+ G ++ AS+ L +A IS+ I +E + T LF+R R ++L+ G++ Sbjct: 9 MKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFY 68 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 ++++ D + ++++ L GL +G + + S + L ++ AF ++YP + L Sbjct: 69 EKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLI 128 Query: 131 VGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQISVGQ 190 + +Q+ DIG+T + + LI+ ++H LA++ + + Sbjct: 129 ENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKYETVKLED 188 Query: 191 L 191 L Sbjct: 189 L 189 >AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 5/210 (2%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 LR F VV S A+ L+++ A++R+I LEQ + L ER R + +A G+ + Sbjct: 10 LRAFQAVVELESFHRAADALHISQPALTRRIQKLEQAIGAPLLERTTRHVAPTAMGQEVM 69 Query: 71 AHARKMALEADRVVADLQALK--GLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQ 128 R+M E D L A+K R G + ++ A FLP +I F K+YP + Sbjct: 70 PLVRRMLEEFD---GSLFAMKDGAQRRGLITMACVPTAAFYFLPTVIKTFSKQYPHIRLR 126 Query: 129 LFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQISV 188 + + V G + G+ +P++ P L MRKDHPLA F I Sbjct: 127 IRDLTANEGLQAVARGEVEFGINLMGNSDPDLAFEPLIDDPFVLAMRKDHPLAAFETIQW 186 Query: 189 GQLKPYPMALPDPTTTLRQLFDIACSRQQV 218 QL+P+P+ + D ++ R L D A +R + Sbjct: 187 DQLEPHPLVVVDRSSGNRTLLDGALARHNL 216 >sll1594 [K] COG0583 Transcriptional regulator Syn Synechocystis Length = 316 Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 8/290 (2%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 L+ F R GS + A++ L + +S QI L + + LFE+ + + L+ G+ L Sbjct: 8 LKVFEATARHGSFTRAAEELYITQPTVSSQIKQLSKTVGLPLFEQIGKRLYLTEAGQELL 67 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 + + D + +KG + GR+RL+ A F+PRL+ F +KYPG L Sbjct: 68 VTCQDIFQRLDNFAMKVADIKGTKQGRLRLAVITT-AKYFIPRLLGEFIQKYPGIEVSLK 126 Query: 131 VGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQP---GPIALIMRKDHPLARFRQIS 187 V + +++ D L P EI ++ QP P+ +I R+DHPLA I Sbjct: 127 VTNHEQIRHRMQNNEDD--LYIVSEPPEEID-LNYQPFLDNPLVVIARRDHPLAGKSNIP 183 Query: 188 VGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDALSITGE 247 + L + + + R R V + + +++ + +S+ + Sbjct: 184 ITALNDEAFIMREKGSGTRLAVQNLFHRHYVDVRVRLELGSNEAIKQAIAGGMGISVLSQ 243 Query: 248 VTVRYRIATGELTMRPIRDCPADGRFVEVQTLAGRTLPRSVEIFLDYLVA 297 T+ A ELT+ I + P R+ V LAG+ L + FLDYL+A Sbjct: 244 HTLVSEGARSELTILDIDEFPIKRRWY-VANLAGKQLSVITQTFLDYLMA 292 >VC1617 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 296 Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 96/217 (44%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 LR+F+ V S + A+Q+L++A A+S I EQ L LF+R R + L+ GE+L Sbjct: 13 LRHFVTVAEWESFTLAAQQLHIAQPALSISIKKFEQQLGVTLFKRDERKVALTHEGEVLL 72 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 HA+++ + + + LKG+ G VRL A F P++I AF+ +P + Sbjct: 73 EHAKRILQQVNDAQLAVDELKGVVKGEVRLGAPSMMGSYFFPQIIMAFKSHFPNLKMTVI 132 Query: 131 VGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQISVGQ 190 + R + G DIG+ ++ + ++ K+H LA R ++ + Sbjct: 133 EAGTQSIRRMLLSGELDIGVILNHDLPDDLAADPLLSSQMVAVVGKNHELAERRHLTFAE 192 Query: 191 LKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSN 227 + + + P R D C + + +N Sbjct: 193 FFEHELVMFKPGYFHRDFIDKVCREHKFTADFSFETN 229