BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0115.p (245 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC2553 [V] COG1136 ABC-type antimicrobial peptide transport syst... 251 8e-67 PA4064 [V] COG1136 ABC-type antimicrobial peptide transport syst... 232 5e-61 CC2091 [V] COG1136 ABC-type antimicrobial peptide transport syst... 148 1e-35 MJ0796 [V] COG1136 ABC-type antimicrobial peptide transport syst... 147 2e-35 TM0705 [V] COG1136 ABC-type antimicrobial peptide transport syst... 147 3e-35 MK1654 [V] COG1136 ABC-type antimicrobial peptide transport syst... 143 3e-34 PM0996_1 [V] COG1136 ABC-type antimicrobial peptide transport sy... 142 5e-34 lin0233 [V] COG1136 ABC-type antimicrobial peptide transport sys... 140 4e-33 alr1507 [V] COG1136 ABC-type antimicrobial peptide transport sys... 139 4e-33 RSp1464 [V] COG1136 ABC-type antimicrobial peptide transport sys... 139 4e-33 >VC2553 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Vch Vibrio cholerae Length = 238 Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 131/231 (56%), Positives = 160/231 (69%), Gaps = 3/231 (1%) Query: 8 PPPAAIDLRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQ 67 P + I+L D+ F W G P L + L+IA GEH+F+ GPSG GKSTLL+ + GI Sbjct: 8 PTSSVIELNDVVFCWPGASSPTLDIAHLQIARGEHLFVKGPSGCGKSTLLSLLTGINTAT 67 Query: 68 HGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRA 127 G V +LG L L A QRDRFR DH+G+IFQQFNLLPYLS+LDNV LPC FSA RKQ Sbjct: 68 QGVVSLLGSDLSRLSASQRDRFRADHIGYIFQQFNLLPYLSVLDNVTLPCHFSALRKQ-- 125 Query: 128 LQQGANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTS 187 Q LS AQ+LL L L +L +PVT+LSIGQQQRVAAARAL+G P++I+ADEPTS Sbjct: 126 -QVDGPLSHKAQSLLERLHLPSALLNKPVTELSIGQQQRVAAARALMGEPQLIIADEPTS 184 Query: 188 ALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAA 238 ALD D ++AF+ LLR E + G+ LVFVSHD L + F+R V L +N A Sbjct: 185 ALDYDNREAFIALLREEAERVGSTLVFVSHDPTLEKLFERSVHLPTLNRAG 235 >PA4064 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Pae Pseudomonas aeruginosa Length = 234 Score = 232 bits (592), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 165/232 (71%), Gaps = 1/232 (0%) Query: 11 AAIDLRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGS 70 A I L +L F W GQ L + S + GE +F+ GPSGSGK+TLL +GG+ P GS Sbjct: 3 ALITLTNLGFAWPGQAE-LLDIPSFHLERGESLFLKGPSGSGKTTLLGLLGGVQKPGRGS 61 Query: 71 VEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQ 130 + +LG+ L L A +RD FRVDH G+IFQQFNLLP+LS+ +NV LPC FSA R+QRA ++ Sbjct: 62 IRLLGEDLEKLSAARRDHFRVDHTGYIFQQFNLLPFLSVRENVELPCHFSALRRQRARER 121 Query: 131 GANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALD 190 + + AA LL L L L +R LSIGQQQRVAAARALIG+PE+++ADEPTSALD Sbjct: 122 HGSPAQAASHLLGQLGLGGELHERRADSLSIGQQQRVAAARALIGQPELVIADEPTSALD 181 Query: 191 SDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAARHAG 242 +D ++AFL+LL EC ++GA+L+FVSHD LA FDR ++L +N AAR AG Sbjct: 182 ADSREAFLQLLFAECREAGASLLFVSHDQSLAGLFDRSLSLSDLNRAARPAG 233 >CC2091 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Ccr Caulobacter vibrioides Length = 249 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 15/197 (7%) Query: 40 GEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVL-GKRLHTLPAPQRDRFRVDHLGFIF 98 G+ + GPSGSGKSTL+AA+ G++ P G V L K L +LP + D+FR+DH GFIF Sbjct: 43 GDVTMVMGPSGSGKSTLVAALSGLLKPDEGKVSALEAKDLWSLPTGKIDKFRLDHCGFIF 102 Query: 99 QQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGAN---LSAAAQALLAALDLAPSLWQRP 155 Q FNL P L+ V+ ++ QGA+ + AQA L ++ L P + QRP Sbjct: 103 QGFNLFPALTAKQQVMTALKY----------QGASPGEQARRAQAALESVGLGPRVNQRP 152 Query: 156 VTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLELLRRECAQSGAALVFV 215 ++LS G++QRVA ARAL P +I ADEPTSALD + Q + LLR + GAA++ V Sbjct: 153 -SELSGGEKQRVAIARALAKNPNLIFADEPTSALDGENGQIVIRLLREAASVRGAAVICV 211 Query: 216 SHDLRLAQGFDRLVALE 232 +HD RL DR++ +E Sbjct: 212 THDPRLEAYADRVIHIE 228 >MJ0796 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Mja Methanococcus jannaschii Length = 235 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 6/222 (2%) Query: 13 IDLRDLQFTWAGQPHPALAL--TSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGS 70 I L+++ T+ AL +L I GE V I GPSGSGKST+L IG + P G Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61 Query: 71 VEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQ 130 V + + + L + + R D +GF+FQQFNL+P L+ L+NV LP F K R Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF----KYRGAMS 117 Query: 131 GANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALD 190 G A L +L QLS GQQQRVA ARAL P II+ADEPT ALD Sbjct: 118 GEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALD 177 Query: 191 SDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALE 232 S + ++LL++ + G +V V+HD+ +A+ +R++ L+ Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLK 219 >TM0705 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Tma Thermotoga maritima Length = 228 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 133/222 (59%), Gaps = 11/222 (4%) Query: 11 AAIDLRDLQFTWAGQPH-PALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHG 69 A I++ +L + G+ AL +LRI GE V I GPSGSGK+TLL + G+ P G Sbjct: 3 ALIEVHNLWKEYNGKEKVTALKGINLRINTGEFVVILGPSGSGKTTLLNCLSGVDRPTRG 62 Query: 70 SVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQ 129 +V + G L+TL +R RFR +++GF+FQ FNL+P L+ ++NV LP ++ A + Sbjct: 63 TVIIHGTDLYTLSEEERTRFRAENMGFVFQFFNLVPVLTAIENVELPLLILGVNRKEARE 122 Query: 130 QGANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSAL 189 + A +L + LA + P +LS G++QRVA ARA++ P++I ADEPT AL Sbjct: 123 R-------AFEILRKVGLAHKCDRFP-EELSGGEKQRVAIARAIVHNPKVIWADEPTGAL 174 Query: 190 DSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVAL 231 D++ + ++LL + + LV V+HD R+A+ DR++ + Sbjct: 175 DNETGRMIIDLLME--MKENSTLVVVTHDERIAEKADRVIRI 214 >MK1654 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Mka Methanopyrus kandleri AV19 Length = 235 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 11/203 (5%) Query: 29 ALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVLGKRLHTLPAPQRDR 88 AL SL + GE + I GPSGSGKSTLL +G + P G VE+ GK + L + Sbjct: 24 ALKGVSLGVKNGEFLMIVGPSGSGKSTLLHIMGALDTPTSGRVEIAGKDMTNLSDEELAE 83 Query: 89 FRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGANLSAAAQALLAALDLA 148 R ++GF+FQQ+NL+ L++L+NV+ P + G A+ LL + L Sbjct: 84 IRNKYVGFVFQQYNLIESLTVLENVMFPMTLA----------GEEDEERAKDLLRKVGLK 133 Query: 149 PSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLELLRRECAQS 208 + + +QLS G+QQRVA ARAL PE+I+ADEPT LD+ Q ++LL + S Sbjct: 134 EEHFDKFPSQLSGGEQQRVAIARALANDPEVILADEPTGQLDTKNSQRIMKLLEK-LNDS 192 Query: 209 GAALVFVSHDLRLAQGFDRLVAL 231 G +V V+HDL L + DR++ L Sbjct: 193 GHTIVMVTHDLSLVRWADRVILL 215 >PM0996_1 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Pmu Pasteurella multocida Length = 256 Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 11/222 (4%) Query: 13 IDLRDL--QFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGS 70 I+L+++ ++ L +L+I AGE V I G SGSGKSTL+ +G + G Sbjct: 7 IELKNIVRRYGHGDTETTVLKSINLKIYAGEMVAIVGASGSGKSTLMNLLGVLDQADDGE 66 Query: 71 VEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQ 130 G+++ TL + + R H GF+FQ+++LLP+L+ ++NV +P +SA K++ +++ Sbjct: 67 YLFRGRQISTLSSDELADLRCYHFGFVFQRYHLLPHLTAVENVEIPAIYSAMEKEKRIER 126 Query: 131 GANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALD 190 AQ LL L L L +P +QLS GQQQRV+ ARAL+ EII+ADEPT ALD Sbjct: 127 -------AQKLLCRLGLENQLKHKP-SQLSGGQQQRVSIARALMNGGEIILADEPTGALD 178 Query: 191 SDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALE 232 S Q L +L+ Q G +V ++HD+++A DR++ ++ Sbjct: 179 SQSSQEVLSVLKTLNHQ-GHTVVLITHDMQIASHADRIITMK 219 >lin0233 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Lin Listeria innocua Length = 230 Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 15/218 (6%) Query: 9 PPAAIDLRDLQ--FTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILP 66 P ID+++L +T G+ AL + + GE + I GPSGSGKSTL+ IG + +P Sbjct: 2 PKPLIDMKNLTKTYTLGGETFKALDDVTFTVEKGEFLSIVGPSGSGKSTLMNMIGCLDVP 61 Query: 67 QHGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQR 126 GS + + L + R +GFIFQQFNLLP LS +N+ LP ++ Sbjct: 62 DEGSYHLDNVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENIELPLIYA------ 115 Query: 127 ALQQGANLSAAAQALLAALDLAPSLWQRPV--TQLSIGQQQRVAAARALIGRPEIIVADE 184 G ++SA +A + L+ L +R TQLS GQQQRVA ARAL G P+I++ADE Sbjct: 116 ----GLSVSAREKAAIECLEKVGLLEKRKNLPTQLSGGQQQRVAIARALAGNPQILLADE 171 Query: 185 PTSALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLA 222 PT ALDS + + +L +E ++G +V ++HD +A Sbjct: 172 PTGALDSKTGKEVMGIL-QELNKAGNTIVMITHDPTIA 208 >alr1507 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Nos Nostoc sp. PCC 7120 Length = 233 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 117/205 (57%), Gaps = 9/205 (4%) Query: 28 PALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVLGKRLHTLPAPQRD 87 P L +L I GE+V I G SGSGKSTL+ IG + P G + G+ L TL + Sbjct: 25 PVLKEINLSIEDGEYVAIMGASGSGKSTLMNIIGCLDRPTSGQYILDGRELTTLDDDELA 84 Query: 88 RFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGANLSAAAQALLAALDL 147 R ++GF+FQQFNLLP L+ L+NV+LP ++ + + L+ +A A L + L Sbjct: 85 DIRNQYIGFVFQQFNLLPRLTALENVMLPMIYADVPRSQRLK-------SAIAALENIGL 137 Query: 148 APSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQQAFLELLRRECAQ 207 L RP +QLS GQQQRVA ARAL+ P +++ADEPT ALDS + LL E Q Sbjct: 138 GDRLTNRP-SQLSGGQQQRVAIARALVNHPALVLADEPTGALDSKTSHEIMNLL-TELNQ 195 Query: 208 SGAALVFVSHDLRLAQGFDRLVALE 232 G + V+HD +A R++ ++ Sbjct: 196 QGTTIAIVTHDATVADQTKRVIQMQ 220 >RSp1464 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Rso Ralstonia solanacearum Length = 260 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 132/227 (58%), Gaps = 10/227 (4%) Query: 7 SPPPAAIDLRDLQFTW--AGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGII 64 +P I+LR + T+ AG+ A+ L++ +GE + + GPSGSGKST++ +G + Sbjct: 11 APAGLLIELRQVSRTFQVAGETVAAVRGVDLQVRSGEVLAMVGPSGSGKSTMMNLLGLLD 70 Query: 65 LPQHGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRK 124 P G + G TL + ++ R R +GF+FQQF+LLP L+ L N LP + Sbjct: 71 TPTSGQYRLAGVDTQTLSSQEKSRLRNQDIGFVFQQFHLLPALTALQNAQLPLLY----- 125 Query: 125 QRALQQGANLSAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADE 184 R L Q A+L AA+A L A+ L L RP +LS G++QRVA ARA+ G+P +++ADE Sbjct: 126 -RGLSQRASLD-AARAALVAVGLEHRLSHRPA-ELSGGERQRVAIARAMAGQPRLLLADE 182 Query: 185 PTSALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVAL 231 PT ALDS L LLR A G AL+ ++HDL +A+ R + + Sbjct: 183 PTGALDSATGARVLALLREVTATHGTALLMITHDLEIARQLPRQIEM 229