BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0114.p         (193 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4063 Non COG                                                         88   9e-18
VC2552 Non COG                                                         71   2e-12

>PA4063 Non COG
          Length = 196

 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 35  HVHGVGKLDVALEGNTLTLHLDTPLVNVVGFEHAASSSKDKDTVRAAARTLREVNRIFAT 94
           H HGV +L+VAL+G TL L LD+P +N+VGFEHAAS+  DK  V  A   L +   +FA 
Sbjct: 33  HEHGVAQLNVALDGKTLELELDSPAMNLVGFEHAASTDADKAAVAKARAQLEKPLELFAL 92

Query: 95  DAAAQCKSAEIQLESAALSPALLGEKAAASAQDAP-----------KDGHADLDGDFTLV 143
              A C  A  +L S      L G+KA A A               + GHAD+   + L 
Sbjct: 93  PVTAGCSVASQELRS-----PLFGDKAPAHAHKEKAGHEHEHEHEHEHGHADIHAHYQLS 147

Query: 144 CASPGALTTLDLNGLFSAFPGFQRIDVQLATPKKQGALQLTPGNALIPL 192
           C  P  L  L L   F  FP  Q+I VQL  P  Q    L P +A + L
Sbjct: 148 CEKPELLKLLTLAEFFKRFPATQKIQVQLIGPDGQKGADLAPASAELKL 196


>VC2552 Non COG
          Length = 242

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 85/224 (37%), Gaps = 55/224 (24%)

Query: 22  ADDAHDH-HGNHPAHVHGVGKLDVALEGNTLTLHLDTPLVNVVGFEHAASSSKDKDTVRA 80
           AD   DH H  H AHVHG  +L++A +G+ L L +  P  +VVGFEHA      K  +  
Sbjct: 21  ADHHSDHQHRQHEAHVHGQVELNIAQDGHDLLLEITAPGADVVGFEHAPQDDAQKQALEK 80

Query: 81  AARTLREVNRIFATDAAAQCKSAEIQL------ESAALSPALLGEKAAASAQ-------- 126
           A  TL    ++FA    AQC+  E+ +      E    S A  GE      Q        
Sbjct: 81  ALETLHHPEKLFALSDKAQCEKREVLIKHTLGGEEYQHSHA-YGEDEEHEHQHGEGEHDH 139

Query: 127 -------------DAPKDGHADLD---------------------GDFT----LVCASPG 148
                        D   D HAD D                     G FT      C +  
Sbjct: 140 KAHDHKDHDHKGHDHAADEHADHDHKEHDHKGHEHEGHDHDEHQHGSFTAQYQFHCEAVD 199

Query: 149 ALTTLDLNGLFSAFPGFQRIDVQLATPKKQGALQLTPGNALIPL 192
            L  +D    F  FP  ++I   + T K+Q ALQL     LI L
Sbjct: 200 QLKQIDTQ-WFQYFPSTEKIQANVLTEKQQSALQLNAKQTLIKL 242