BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0094.p (596 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1156 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 431 e-120 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 383 e-106 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 377 e-104 tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri... 374 e-103 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 374 e-103 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 372 e-102 ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 371 e-102 Ztsr [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 369 e-102 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 361 3e-99 STM1919 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 357 4e-98 >RSc1156 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust. Identities = 298/606 (49%), Positives = 401/606 (66%), Gaps = 20/606 (3%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++N +VR L++ L F+ MIVVGA VG+ AL AN +TE VH I+ R++L+NDAYKD Sbjct: 5 LKNTSVRAGLLAILVTFALMIVVGAAVGVLALSTANVSTERVHAISARSMLLNDAYKDMM 64 Query: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 R R R+Y L E + +AL SAE ++SL LD + P +EG D A + Sbjct: 65 RARTGLARVYGMLRENPGTPLASNALDSAESGVKKSLAQLDAFKSAPAIEGVDQALRQAA 124 Query: 121 LDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 +A+A + +++A L+A DAA Y+ +N ++ GA +S ++ +QK + +L Sbjct: 125 AQAAQAHADAVQRAMAALRASDAAAYATINAKDVTSSGAAWSVEIERFQKLSSQLAQEEA 184 Query: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Q Y L+V V G++ A+ L+ VH+ L+ V+TPLN AV +L VA GDL+ +V Sbjct: 185 DGGQARYGLIVKFVSVGIVMALALIAAVHYALKAFVVTPLNDAVDVLTRVAEGDLSVQVR 244 Query: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 NE+GRL SA+ M+ +LL TV +VRSSSD+++T A EIA+GN+DLSSRTEQQ++SL Sbjct: 245 EGGRNELGRLLSAVARMRASLLQTVRQVRSSSDAVNTGAHEIASGNLDLSSRTEQQSASL 304 Query: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 E+TAASME++T TV N+ENA QA+ LA SA+ AS+GGEVV VV TM I+ SSRK+ Sbjct: 305 EKTAASMEQMTSTVTNNSENARQASALAASAADLASRGGEVVRGVVSTMDEISASSRKMA 364 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAKEIK LID Sbjct: 365 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKEIKDLID 424 Query: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 SV++V+AG+ LV QAG+TM+E V +V+RV +IV +IA AS EQ+ GI Q+++A+++M++ Sbjct: 425 ASVDRVQAGNTLVAQAGSTMTETVDAVRRVANIVEDIAAASSEQTQGILQISQAVSEMEQ 484 Query: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPTGKPASKPRAAPAARPVT 540 VTQQNAALVE+AAAAAQSL+ Q+ NL V+ F+++ AA A++PV Sbjct: 485 VTQQNAALVEQAAAAAQSLEEQSLNLTHVVAQFRLD---------ETDGVVAAAASKPVR 535 Query: 541 TPQVAAPAA------PAVTAAAPS----SSASAPKSAPKLPPAPPKAAAKPASSRAKDDA 590 T AA P V PS + A+ P AP P A+P ++ A D Sbjct: 536 TAPAAAVKPAAKPPRPVVRKRGPSPKAVAPATVPVVAPAAAPVVAPVKAQPLAAVAGSDG 595 Query: 591 QDWEEF 596 DWE F Sbjct: 596 -DWETF 600 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust. Identities = 237/470 (50%), Positives = 309/470 (65%), Gaps = 18/470 (3%) Query: 77 GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTELLDSAKALNEVLKKATD 136 G A + ++ A T + + K ++Y LP Q A E+ + + L + Sbjct: 82 GSGATVAELMQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQ 141 Query: 137 LLKAGDAAGYSQLNNNFISKGGARFSTALD----AYQKRAMELNDNVTTQRQREYNLVVW 192 LL AG N F + + A + AY ++ L D YN +W Sbjct: 142 LLGAGKI-------NEFFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMW 194 Query: 193 LVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVEVASSNEIGRLFS 252 ++V+ LI + +++ V F ++ ++ P+NR + + +A+GDL +++V SNE+G+L Sbjct: 195 VLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAE 254 Query: 253 AIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEELTG 312 +R MQ L+ TV VR+ +++I + A EIA GN DLSSRTEQQA+SLEETAASME+LT Sbjct: 255 NLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTA 314 Query: 313 TVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIVDIISVIDGIAFQ 372 TVKQNAENA QA+ LA SAS TA KGG+VV VV TM+ I SS+KI DIISVIDGIAFQ Sbjct: 315 TVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQ 374 Query: 373 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQL 432 TNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIKSLI+DSV +V+ GS L Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTL 434 Query: 433 VEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEA 492 VE AG TM E+V +V RVTDI+GEIA AS EQS GI+QV A+ +MD VTQQNA+LVEE+ Sbjct: 435 VESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEES 494 Query: 493 AAAAQSLQAQATNLVGAVSIFKIE-----AHQVAPTGKPA--SKPRAAPA 535 AAAA +L+ QA+ L AV++F+I A +VA PA S P+AA A Sbjct: 495 AAAAAALEEQASRLTQAVAVFRIHQQQQRAREVAAVKTPAAVSSPKAAVA 544 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/558 (43%), Positives = 345/558 (61%), Gaps = 25/558 (4%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 M+N+ V +++ L +FS +++V + A+ + ++ + + +++ Sbjct: 1 MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASALSYQQQELGGSFQTLI 60 Query: 61 RTRAAHGRMYATLME-KGDQAVID---SALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 TR R+ +++ + D A +D + L +A + + K+ + Y + G+DPA Sbjct: 61 ETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEKHFNNYVNSEAIAGKDPAL 120 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELN 176 + S K + +VL+++ LKA + A Y L+ K D + + +L Sbjct: 121 DAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLD---AQKAQDDMEQVYDQWLSQNAQLI 177 Query: 177 DNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLT 236 + Q Q + + W + L+ + ++ + L+ ++L PL R + + +A+GDLT Sbjct: 178 KLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLLRPLQRIMAHIQTIADGDLT 237 Query: 237 TKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQ 296 ++E +E+G+L + +++MQQ+L+ TVS VR ++DSI T A EI+AG+ DLSSRTEQQ Sbjct: 238 HEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQ 297 Query: 297 ASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSS 356 AS+LEETAASME+LT TV+QN +NA QA LA +AS TA KGG VV VV TM I +SS Sbjct: 298 ASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDIAESS 357 Query: 357 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 416 KIVDI SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RSA AAKEIK Sbjct: 358 EKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIK 417 Query: 417 SLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAIT 476 LI++SV +++ GS V +AG TM E+V +V RVTDI+GEIA AS EQS GIEQV +A++ Sbjct: 418 VLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVS 477 Query: 477 QMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPTGKPASKPRAAPAA 536 +MD VTQQNA+LVEE+AAAA +L+ QA L AV+ F+I+ +PR A Sbjct: 478 EMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQ-----------KQPR--REA 524 Query: 537 RPVT-----TPQVAAPAA 549 P T TPQ AA A Sbjct: 525 SPTTLSKGLTPQPAAEQA 542 >tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia coli K12 Length = 551 Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/548 (44%), Positives = 340/548 (62%), Gaps = 20/548 (3%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++ + + SL+ LA+F + + G+ AL + I ++ +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRAAHGRMYATLMEK----GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 +TR R M G + + ++SA ++ +++ K +Y LP Q A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMESASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALD----AYQKRA 172 E+ + + L + LL AG N F + + + AY ++ Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKI-------NEFFDQPTQGYQDGFEKQYVAYMEQN 174 Query: 173 MELNDNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVAN 232 L+D + Y+ +W++V +I + ++ V F ++ ++ P+NR + + +A Sbjct: 175 DRLHDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAG 234 Query: 233 GDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSR 292 GDL +EV SNE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DLSSR Sbjct: 235 GDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSR 294 Query: 293 TEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAI 352 TEQQA+SLEETAASME+LT TVKQNAENA QA+ LA SAS TA +GG+VV VV TM+ I Sbjct: 295 TEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDI 354 Query: 353 NDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 412 + SS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA Sbjct: 355 STSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAA 414 Query: 413 KEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVN 472 +EIKSLI+DSV KV+ GS LVE AG TM+E+V++V RVTDI+GEIA AS EQS GI+QV Sbjct: 415 REIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVG 474 Query: 473 RAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQ-----VAPTGKPA 527 A+ +MD VTQQNAALVEE+AAAA +L+ QA+ L AV++F+I+ Q V T PA Sbjct: 475 LAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQRETSAVVKTVTPA 534 Query: 528 SKPRAAPA 535 + + A A Sbjct: 535 APRKMAVA 542 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/536 (44%), Positives = 328/536 (61%), Gaps = 46/536 (8%) Query: 3 NLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLI-------NDA 55 ++ + L +A AL +++ A VGI L N T+ ++ER LI N+ Sbjct: 5 DMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNN--TKMGQIVSERYSLIALSNQIKNNG 62 Query: 56 YKDTTRTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYA----------- 104 YK A+G + L+ T E+ KY+ +YA Sbjct: 63 YK-------ANGILSNLLLVT---------------TPEQKTKYMSDYAAIRQANAQAYG 100 Query: 105 KLPDL--EGQDPATKTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFS 162 +L L Q A E D+ A ++K L+ A + L +S+ R+ Sbjct: 101 RLEKLLTTDQGKALFKEQFDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYY 160 Query: 163 TALDAY-QKRAMELNDNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLN 221 +D +A E+ +V+ + N + ++V ++ + + F+ R I P+N Sbjct: 161 VLVDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTIT-RPIN 219 Query: 222 RAVHLLDLVANGDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKE 281 A+HL + VA G+LT +EV + +EIGRL +A++ M + L VS+VR +D+I ++ E Sbjct: 220 HAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSE 279 Query: 282 IAAGNMDLSSRTEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEV 341 +A+GN+DLSSRTEQQASSLEETAA+ME+LT TVKQNA+NA +A++LA +AS A+KGG+ Sbjct: 280 VASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDA 339 Query: 342 VSQVVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 401 V + + TM IN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EV Sbjct: 340 VDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEV 399 Query: 402 RSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEAS 461 RSLAQRSAAAAKEIK+LI+DSV V G+ VE+AG + +VV +Q VT+IV EI+ +S Sbjct: 400 RSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASS 459 Query: 462 REQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEA 517 REQS GIEQ+N AITQMD+ TQ+NA+LVEE+A AAQ+LQ QA L VS FK+ A Sbjct: 460 REQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLHA 515 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/501 (45%), Positives = 314/501 (62%), Gaps = 7/501 (1%) Query: 17 FSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTTRTRAAHGRMYATLM-- 74 F + +V G+ +L + I ++ ++N+++ +TR R M Sbjct: 18 FGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMD 77 Query: 75 --EKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTELLDSAKALNEVLK 132 G + + SA+ T + Y K+P QDP +L S + E Sbjct: 78 INHTGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYE---EYFS 134 Query: 133 KATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVTTQRQREYNLVVW 192 T+L+ + ++ N+ + F + Y + L D+ + ++ + Sbjct: 135 ALTELINLMETNKINEFFNHPTTSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMG 194 Query: 193 LVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVEVASSNEIGRLFS 252 +V+T L+ + +++ V ++ I++ PLN + + +ANGDLT +EV NE+G L + Sbjct: 195 VVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAA 254 Query: 253 AIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEELTG 312 +++ MQ L+T V VR +D+I + A EIA GN DLS+RTEQQA+SLEETAASME+LT Sbjct: 255 SLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTA 314 Query: 313 TVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIVDIISVIDGIAFQ 372 TVKQNAENA QA+QLA SAS TA KGG+VV+ VV TM I SS+KI DI SVIDGIAFQ Sbjct: 315 TVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQ 374 Query: 373 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQL 432 TNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LIDDSV +V+ GS L Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVL 434 Query: 433 VEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEA 492 VE AG TM ++V +V RVTDI+GEIA AS EQS GI+Q+ +A+ +MD VTQQNA+LVEE+ Sbjct: 435 VESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEES 494 Query: 493 AAAAQSLQAQATNLVGAVSIF 513 A+AA SL+ QA+ L A+S+F Sbjct: 495 ASAAASLEEQASMLTQAMSVF 515 >ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 554 Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust. Identities = 246/551 (44%), Positives = 338/551 (61%), Gaps = 23/551 (4%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++ + + SL+ LA+F + + G+ AL + I ++ +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRAAHGRMYATLMEK----GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 +TR R M G + + ++SA ++ +++ K +Y LP Q A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALD----AYQKRA 172 E+ + + L + LL AG N F + + + AY ++ Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKI-------NEFFDQPTQGYQDGFEKQYVAYMEQN 174 Query: 173 MELNDNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVAN 232 L D + Y+ +W++V +I + ++ V F ++ ++ P+NR + + +A Sbjct: 175 DRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAG 234 Query: 233 GDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSR 292 GDL +EV SNE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DLSSR Sbjct: 235 GDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSR 294 Query: 293 TEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAI 352 TEQQA+SLEETAASME+LT TVKQNAENA QA+ LA SAS TA +GG+VV VV TM+ I Sbjct: 295 TEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDI 354 Query: 353 NDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 412 + SS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA Sbjct: 355 STSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAA 414 Query: 413 KEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVN 472 +EIKSLI+DSV KV+ GS LVE AG TM+E+V++V RVTDI+GEIA AS EQS GI+QV Sbjct: 415 REIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVG 474 Query: 473 RAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKI--------EAHQVAPTG 524 A+ +MD VTQQNAALVEE+AAAA +L+ QA+ L AV++F+I E V T Sbjct: 475 LAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKTV 534 Query: 525 KPASKPRAAPA 535 PA+ + A A Sbjct: 535 TPATPRKMAVA 545 >Ztsr [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 554 Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/551 (44%), Positives = 337/551 (61%), Gaps = 23/551 (4%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++ + + SL+ LA+F + + G+ AL + I ++ +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRAAHGRMYATLMEK----GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 +TR R M G + + ++SA ++ +++ K +Y LP Q A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALD----AYQKRA 172 E+ + + L + LL AG N F + + + AY ++ Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKI-------NEFFDQPTQGYQDGFEKQYVAYMEQN 174 Query: 173 MELNDNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVAN 232 L D + Y+ +W++V +I + ++ V F ++ ++ P+NR + + +A Sbjct: 175 DRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAG 234 Query: 233 GDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSR 292 GDL +EV SNE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DL SR Sbjct: 235 GDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLXSR 294 Query: 293 TEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAI 352 TEQQA+SLEETAASME+LT TVKQNAENA QA+ LA SAS TA +GG+VV VV TM+ I Sbjct: 295 TEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDI 354 Query: 353 NDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 412 + SS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA Sbjct: 355 STSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAA 414 Query: 413 KEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVN 472 +EIKSLI+DSV KV+ GS LVE AG TM+E+V++V RVTDI+GEIA AS EQS GI+QV Sbjct: 415 REIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVG 474 Query: 473 RAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKI--------EAHQVAPTG 524 A+ +MD VTQQNAALVEE+AAAA +L+ QA+ L AV++F+I E V T Sbjct: 475 LAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKTV 534 Query: 525 KPASKPRAAPA 535 PA+ + A A Sbjct: 535 TPATPRKMAVA 545 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 361 bits (926), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 275/632 (43%), Positives = 358/632 (56%), Gaps = 61/632 (9%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEIT---ERALLINDAYK 57 R +T+R L +A + + VV G+ + AN + +E+ AL +DA Sbjct: 2 FRGMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYEMQLAGAVALAESDASM 61 Query: 58 DTTRTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYL-------DEYAKLPD-- 108 + R D+A +D S T ER+ +L Y LP Sbjct: 62 LSFRLVL-------------DRAAMDIKAPSLGKTLERARMFLAKSDASWKRYRALPSTP 108 Query: 109 ----LEGQDPATKTELL-DSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFST 163 L + A +T L D A+AL + ++ AGDA SQ + Sbjct: 109 DERKLADEADALRTVFLRDGAQALMQAIQ-------AGDAERTSQTVMEAMPALYRPLGD 161 Query: 164 ALDAYQKRAMELNDNVTTQRQREYN----LVVWLVVTGLIGAMFLVVGVHFLLRNIVLTP 219 + A + ME+ QRE++ L L++ G++G L + LR + P Sbjct: 162 KVTALSRMQMEIARASYEAGQREHDGLSALTAALLLVGIVGGGLLT----WSLRRSITVP 217 Query: 220 LNRAVHLLDLVANGDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSA 279 LNRA+ + + GDLT + V ++E GR+ A++ MQ++L V +VR+ SD+I ++ Sbjct: 218 LNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASAT 277 Query: 280 KEIAAGNMDLSSRTEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGG 339 ++IAAGN DLS RTEQQASSLEETA+SME+LTG VKQNA++A QA+ LA +AS A KGG Sbjct: 278 QQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAVNASDIAVKGG 337 Query: 340 EVVSQVVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 399 EVV +VV+TM I+DSSRKI DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 338 EVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAG 397 Query: 400 EVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAE 459 EVRSLAQRSA AAKEIK+LI DSV +VE+G+ LV +AG + EVV +V+RVT I+GEI+ Sbjct: 398 EVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEISA 457 Query: 460 ASREQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQ 519 AS QS GI QVN+A+TQMDE TQQNAALVE+AAAAA SLQ QA L G V+ F+ A Sbjct: 458 ASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAFRTRADA 517 Query: 520 VAPTGKPASKPRA----------APAARPVTTPQVAAPAAPAVTAAAPSSSASA-----P 564 A T ++P A A A RP VA P A A A PS++AS+ Sbjct: 518 PAQTVARPARPAAAPVKAPARATALARRPAPKAAVARPPATA-GEATPSATASSNEQQRT 576 Query: 565 KSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF 596 + A P P A D DWE F Sbjct: 577 RQAAAKAVVPAPKKQAPKLVAAGGDESDWETF 608 >STM1919 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 357 bits (917), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 214/380 (56%), Positives = 274/380 (72%), Gaps = 3/380 (0%) Query: 164 ALDAYQKRAMELNDNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRA 223 AL Y + + L Q +Y W + + + +++ V F +R+ +L PL R Sbjct: 164 ALGNYARVSENLYRQTFDQSAHDYRFAQWQLGVLAVVLVLILMVVWFGIRHALLNPLARV 223 Query: 224 VHLLDLVANGDLTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIA 283 + + +A+GDLT + V+ NEIG L + MQ++L+ TV++VR SD+I + EIA Sbjct: 224 ITHIREIASGDLTKTLTVSGRNEIGELAGTVEHMQRSLIDTVTQVREGSDAIYSGTSEIA 283 Query: 284 AGNMDLSSRTEQQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVS 343 AGN DLSSRTEQQAS+LEETAASME+LT TVKQNA+NA QA+QLA SAS TA GG+VV Sbjct: 284 AGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASETARHGGKVVD 343 Query: 344 QVVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 403 VV+TM I DSS+KI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+ Sbjct: 344 GVVNTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRN 403 Query: 404 LAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASRE 463 LA RSA AAKEIK+LI+DSV +V+ GS LVE AG TM+++V +V RVTDI+GEIA AS E Sbjct: 404 LASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMTDIVNAVTRVTDIMGEIASASDE 463 Query: 464 QSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPT 523 QS GI+QV A+++MD VTQQNA+LV+E+AAAA +L+ QA+ L AVS F++ + +A Sbjct: 464 QSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLASRPLA-V 522 Query: 524 GKPASKPRAAPAARPVTTPQ 543 KP + R + A+ TPQ Sbjct: 523 NKP--EMRLSVNAQSGNTPQ 540