BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0058.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1286 [M] COG3713 Outer membrane protein V Sty Salmonella typh... 77 3e-14 ZyeaF [M] COG3713 Outer membrane protein V EcZ Escherichia coli ... 69 7e-12 ECs2491 [M] COG3713 Outer membrane protein V Ecs Escherichia col... 69 7e-12 yeaF [M] COG3713 Outer membrane protein V Eco Escherichia coli K12 67 4e-11 ZyiaT [M] COG3713 Outer membrane protein V EcZ Escherichia coli ... 67 4e-11 ECs4460 [M] COG3713 Outer membrane protein V Ecs Escherichia col... 67 4e-11 yiaT [M] COG3713 Outer membrane protein V Eco Escherichia coli K12 67 5e-11 YPO2155 [M] COG3713 Outer membrane protein V Ype Yersinia pestis 59 7e-09 >STM1286 [M] COG3713 Outer membrane protein V Sty Salmonella typhimurium LT2 Length = 248 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 1/147 (0%) Query: 107 LQRRSDPIPLGLGSFQETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVG 165 L RR + G+ T G ++ D + S+G + + + + G ++ P +G Sbjct: 102 LDRRKSTMMAGVSYAHHTQYGFLRTSLAGDTLDNSNGIVWDLAWLYRYTNGGLTLTPGIG 161 Query: 166 VEYRDSRYNDYFYGVSGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKW 225 VE+ NDY+YGVS +E+S SGL Y S +P L L A+ +GNW + T R Sbjct: 162 VEWNSENQNDYYYGVSRKESSRSGLRGYNPNDSWNPYLELSANYNFAGNWSVYGTARYTR 221 Query: 226 LDNAISDSPIIRRKTDDLAILAMTYRF 252 L + I+DSP++ + + +TYRF Sbjct: 222 LSDEITDSPMVDKSWTGILSTGVTYRF 248 >ZyeaF [M] COG3713 Outer membrane protein V EcZ Escherichia coli O157:H7 EDL933 Length = 248 Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%) Query: 137 FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPAYRAG 196 + S+G + + + + G ++ P +GV++ N+Y+YGVS +E++ SGL Y + Sbjct: 133 LDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNSN 192 Query: 197 SSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRF 252 S SP L L A G+W + T R L + ++DSPI+ + L +TY+F Sbjct: 193 DSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPIVDKSWTGLISTGITYKF 248 >ECs2491 [M] COG3713 Outer membrane protein V Ecs Escherichia coli O157:H7 Length = 248 Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%) Query: 137 FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPAYRAG 196 + S+G + + + + G ++ P +GV++ N+Y+YGVS +E++ SGL Y + Sbjct: 133 LDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNSN 192 Query: 197 SSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRF 252 S SP L L A G+W + T R L + ++DSPI+ + L +TY+F Sbjct: 193 DSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPIVDKSWTGLISTGITYKF 248 >yeaF [M] COG3713 Outer membrane protein V Eco Escherichia coli K12 Length = 248 Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%) Query: 137 FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPAYRAG 196 + S+G + + + + G ++ P +GV++ N+Y+YGVS +E++ SGL Y Sbjct: 133 LDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNPN 192 Query: 197 SSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRF 252 S SP L L A G+W + T R L + ++DSP++ + L +TY+F Sbjct: 193 DSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPMVDKSWTGLISTGITYKF 248 >ZyiaT [M] COG3713 Outer membrane protein V EcZ Escherichia coli O157:H7 EDL933 Length = 246 Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 20/251 (7%) Query: 10 LACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAYFDYG 69 +A ALP +A A + + IG G + + T +P ++ Sbjct: 8 VALFALPFMASATASELS------------IGAGAAYNESPYRGYNENTKAIPLISYEGD 55 Query: 70 RFFARVDTFGVKTARMGYGYLELAGRINLEGFD-------AQGGLQRRSDPIPLGLGSFQ 122 F+ R T G ++ L L FD A L +R G+ + Sbjct: 56 SFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPADNDDYAMQQLDKRDSTAMAGVAWYH 115 Query: 123 ETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVS 181 G + D + S+G + E ++ G +S P +GV Y D ++DY+YG+S Sbjct: 116 HERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGIS 175 Query: 182 GQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTD 241 E+ SGL +Y A + P + L A PI + L + L I+DSP+I R Sbjct: 176 ESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNES 235 Query: 242 DLAILAMTYRF 252 + +++RF Sbjct: 236 FTFVTGVSWRF 246 >ECs4460 [M] COG3713 Outer membrane protein V Ecs Escherichia coli O157:H7 Length = 246 Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 20/251 (7%) Query: 10 LACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAYFDYG 69 +A ALP +A A + + IG G + + T +P ++ Sbjct: 8 VALFALPFMASATASELS------------IGAGAAYNESPYRGYNENTKAIPLISYEGD 55 Query: 70 RFFARVDTFGVKTARMGYGYLELAGRINLEGFD-------AQGGLQRRSDPIPLGLGSFQ 122 F+ R T G ++ L L FD A L +R G+ + Sbjct: 56 SFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPADNDDYAMQQLDKRDSTAMAGVAWYH 115 Query: 123 ETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVS 181 G + D + S+G + E ++ G +S P +GV Y D ++DY+YG+S Sbjct: 116 HERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGIS 175 Query: 182 GQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTD 241 E+ SGL +Y A + P + L A PI + L + L I+DSP+I R Sbjct: 176 ESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNES 235 Query: 242 DLAILAMTYRF 252 + +++RF Sbjct: 236 FTFVTGVSWRF 246 >yiaT [M] COG3713 Outer membrane protein V Eco Escherichia coli K12 Length = 246 Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 20/251 (7%) Query: 10 LACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAYFDYG 69 +A ALP +A A + + IG G + + T +P ++ Sbjct: 8 VALFALPFMASATASELS------------IGAGAAYNESPYRGYNENTKAIPLISYEGD 55 Query: 70 RFFARVDTFGVKTARMGYGYLELAGRINLEGFD-------AQGGLQRRSDPIPLGLGSFQ 122 F+ R T G ++ L L FD A L +R G+ + Sbjct: 56 TFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYH 115 Query: 123 ETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVS 181 G + D + S+G + E ++ G +S P +GV Y D ++DY+YG+S Sbjct: 116 HERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGIS 175 Query: 182 GQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTD 241 E+ SGL +Y A + P + L A PI + L + L I+DSP+I R Sbjct: 176 ESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNES 235 Query: 242 DLAILAMTYRF 252 + +++RF Sbjct: 236 FTFVTGVSWRF 246 >YPO2155 [M] COG3713 Outer membrane protein V Ype Yersinia pestis Length = 256 Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 55/117 (47%) Query: 137 FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPAYRAG 196 + S G + + Y + + P VGV + N Y+YGVS E++ SGL Y Sbjct: 140 LDNSDGFVGDLAYLYRFSIDSWTLTPGVGVSWSSKDQNSYYYGVSRGESARSGLAEYNPS 199 Query: 197 SSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRFK 253 S SP L L A+ I+ NW T R L N + +SP++ + + +TY F+ Sbjct: 200 DSWSPYLELSANYNINPNWNAFFTGRYIRLANEVKNSPMVDQSYTGVLWTGVTYTFR 256