BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0040.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1401 Non COG 167 3e-41 RSc0742 Non COG 152 8e-37 ZcheZ [NT] COG3143 Chemotaxis protein EcZ Escherichia coli O157:... 147 3e-35 ECs2591 [NT] COG3143 Chemotaxis protein Ecs Escherichia coli O15... 147 3e-35 cheZ [NT] COG3143 Chemotaxis protein Eco Escherichia coli K12 145 9e-35 STM1915 [NT] COG3143 Chemotaxis protein Sty Salmonella typhimuri... 142 9e-34 YPO1681 [NT] COG3143 Chemotaxis protein Ype Yersinia pestis 141 1e-33 VC2064 [NT] COG3143 Chemotaxis protein Vch Vibrio cholerae 119 8e-27 PA1457 [NT] COG3143 Chemotaxis protein Pae Pseudomonas aeruginosa 97 2e-20 >RSp1401 Non COG Length = 220 Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 137/226 (60%), Gaps = 15/226 (6%) Query: 30 VAQAADGA-----AEAAAPEDQSDKPMYARLGGIVRLLHDSMRELGYDRSLNDVASQIGD 84 +++ +DGA AAAPE D M R+G + R+LH+SMRELG D+ + AS I D Sbjct: 1 MSEMSDGARAGADKTAAAPEGMPD--MLQRIGHLTRMLHESMRELGLDKGVEKAASAIPD 58 Query: 85 AQSRLEHIATLTEQAANKVLNALDSGMPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQL 144 A+ RL +IA +TEQAA +VLNA+D+ P QD+L+ +A+++ RW Q+ DE + L Sbjct: 59 ARDRLNYIANMTEQAATRVLNAIDAARPVQDQLEGEAEELVTRWQSWMDRQLGDDEIRSL 118 Query: 145 AGDSQKFSAAVVESTEAEKARMLEIMMAQDFQDITGQLIKKIVGITTTAERELAQLLRDN 204 + F +V + T +++EI+MAQDFQD+TGQ+IKK++ + E +L +L DN Sbjct: 119 VEITNGFLRSVPQKTRDTNHQLMEILMAQDFQDLTGQVIKKVLDVVQLIESQLVGILLDN 178 Query: 205 APPEVRAQIEAEKPVSLMNGPA----SPGTAMGQTDVDDLLDSLGF 246 AP +R ++ + SL+NGP P Q VDDLL SLGF Sbjct: 179 APEHLRVEVGS----SLLNGPQINPDHPDVVANQEQVDDLLASLGF 220 >RSc0742 Non COG Length = 217 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 8/200 (4%) Query: 51 MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110 M R+G + R+L +S+RELG D+ + AS I DA+ RL ++A +TEQAA + LNA+D+ Sbjct: 22 MLQRIGYLTRMLRESLRELGLDKGIERAASAIPDARDRLNYVANMTEQAAMRALNAIDAA 81 Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170 P QD L +A+ + RW ++S +E + L G+++ F V + T +++EI+ Sbjct: 82 RPVQDALAGEAEALVRRWQAWMDRRLSDEEIRDLVGETRGFLRDVPQKTRDTNQQLMEIL 141 Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPA---- 226 MAQDFQD+TGQ+IKK++ + E EL +L DNAP A AE +L+NGP Sbjct: 142 MAQDFQDLTGQVIKKVLDLIQFIETELIGILTDNAP----AHRSAEVAPTLLNGPQVNPD 197 Query: 227 SPGTAMGQTDVDDLLDSLGF 246 P GQ VDDLL+SLGF Sbjct: 198 PPDVVAGQEQVDDLLESLGF 217 >ZcheZ [NT] COG3143 Chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 214 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 128/201 (63%), Gaps = 8/201 (3%) Query: 51 MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110 + AR+G + R+L DS+RELG D+++ + A I DA+ RL ++ +T QAA + LN++++ Sbjct: 17 IIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEAS 76 Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170 P QD++++ AK + RW +A + + + ++L D++KF A V T A++LEIM Sbjct: 77 QPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRKFLADVPAHTSFTNAQLLEIM 136 Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPP-EVRAQIEAEKPVSLMNGP---- 225 MAQDFQD+TGQ+IK+++ + ER+L +L +N P E R + E + SL+NGP Sbjct: 137 MAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQ---SLLNGPQVDT 193 Query: 226 ASPGTAMGQTDVDDLLDSLGF 246 + G Q VDDLLDSLGF Sbjct: 194 SKAGVVASQDQVDDLLDSLGF 214 >ECs2591 [NT] COG3143 Chemotaxis protein Ecs Escherichia coli O157:H7 Length = 214 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 128/201 (63%), Gaps = 8/201 (3%) Query: 51 MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110 + AR+G + R+L DS+RELG D+++ + A I DA+ RL ++ +T QAA + LN++++ Sbjct: 17 IIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEAS 76 Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170 P QD++++ AK + RW +A + + + ++L D++KF A V T A++LEIM Sbjct: 77 QPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRKFLADVPAHTSFTNAQLLEIM 136 Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPP-EVRAQIEAEKPVSLMNGP---- 225 MAQDFQD+TGQ+IK+++ + ER+L +L +N P E R + E + SL+NGP Sbjct: 137 MAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQ---SLLNGPQVDT 193 Query: 226 ASPGTAMGQTDVDDLLDSLGF 246 + G Q VDDLLDSLGF Sbjct: 194 SKAGVVASQDQVDDLLDSLGF 214 >cheZ [NT] COG3143 Chemotaxis protein Eco Escherichia coli K12 Length = 214 Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 128/201 (63%), Gaps = 8/201 (3%) Query: 51 MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110 + AR+G + R+L DS+RELG D+++ + A I DA+ RL ++ +T QAA + LN++++ Sbjct: 17 IIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEAS 76 Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170 P QD++++ AK + RW +A + + + ++L D+++F A V T A++LEIM Sbjct: 77 QPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLEIM 136 Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPP-EVRAQIEAEKPVSLMNGP---- 225 MAQDFQD+TGQ+IK+++ + ER+L +L +N P E R + E + SL+NGP Sbjct: 137 MAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQ---SLLNGPQVDT 193 Query: 226 ASPGTAMGQTDVDDLLDSLGF 246 + G Q VDDLLDSLGF Sbjct: 194 SKAGVVASQDQVDDLLDSLGF 214 >STM1915 [NT] COG3143 Chemotaxis protein Sty Salmonella typhimurium LT2 Length = 214 Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 127/201 (63%), Gaps = 8/201 (3%) Query: 51 MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110 + AR+G + R+L DS+RELG D+++ + A I DA+ RL+++ +T QAA + LN++++ Sbjct: 17 IIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQMTAQAAERALNSVEAS 76 Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170 P QD ++++AK + RW + + + + ++L D+++F V T A++L+IM Sbjct: 77 QPHQDAMEKEAKALTQRWDEWFDNPIELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIM 136 Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPPE-VRAQIEAEKPVSLMNGP---- 225 MAQDFQD+TGQ+IK+++ + ER+L +L +N P + R + E E SL+NGP Sbjct: 137 MAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQSARPKRENE---SLLNGPQVDT 193 Query: 226 ASPGTAMGQTDVDDLLDSLGF 246 + G Q VDDLLDSLGF Sbjct: 194 SKAGVVASQDQVDDLLDSLGF 214 >YPO1681 [NT] COG3143 Chemotaxis protein Ype Yersinia pestis Length = 214 Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 124/203 (61%), Gaps = 12/203 (5%) Query: 51 MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110 + +R+G + R+L DS+RELG D+++ A I DA+ RL+++ +T QAA + LN +++ Sbjct: 17 IISRIGSLTRMLRDSLRELGLDQAIAQAAEAIPDARDRLDYVVHMTAQAAERALNCVEAA 76 Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170 P Q+ L+ AK + RW +A + + + + L D++++ A V + T A++LEIM Sbjct: 77 QPRQNELESSAKALKIRWDEWFANPIELSDARSLVTDTREYLAVVPQHTSFTNAQLLEIM 136 Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAP--PEVRAQIEAEKPV-SLMNGP-- 225 MAQDFQD+TGQ+IK+++ + E++L +L +N P P + +KP SL+NGP Sbjct: 137 MAQDFQDLTGQVIKRMMDVVQEIEKQLLMVLMENIPDIPS-----KPQKPTDSLLNGPQM 191 Query: 226 --ASPGTAMGQTDVDDLLDSLGF 246 G Q VDDLLDSLGF Sbjct: 192 DKNVAGVIASQDQVDDLLDSLGF 214 >VC2064 [NT] COG3143 Chemotaxis protein Vch Vibrio cholerae Length = 239 Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 11/211 (5%) Query: 45 DQSDKPMYARLGGIVRLLHDSMRELGYDRSLNDVAS-QIGDAQSRLEHIATLTEQAANKV 103 + ++ PM+ +G + R LH++++ D +++A+ +I DA+ RL ++ TE AANK Sbjct: 31 ESANNPMFKEIGMLTRDLHEALKNFQIDERFSEIATDEIPDARERLHYVIQKTEVAANKT 90 Query: 104 LNALDSGMPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEK 163 ++A+D MP D+L E I W+ L G++ + FK L + V + + Sbjct: 91 MDAVDRCMPIADKLHESLLLIRPEWNGLMNGRIELMHFKSLCHRIDDLLSQVEGDSSELR 150 Query: 164 ARMLEIMMAQDFQDITGQLIKKIVGITTTAERELAQLL--------RDNAPPEVRAQIEA 215 + EI+MAQDFQD+TGQ+IK+++ + E+ L ++L A A IE Sbjct: 151 GELTEILMAQDFQDLTGQIIKRVINLVNEVEKRLVEILTVFGAAQKEQKADKATVASIEP 210 Query: 216 EKPVSLMNGPASPGTAMGQTDVDDLLDSLGF 246 E P+ +N Q +VDDLL SLGF Sbjct: 211 EGPI--LNPHERIDAVSSQDEVDDLLSSLGF 239 >PA1457 [NT] COG3143 Chemotaxis protein Pae Pseudomonas aeruginosa Length = 262 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 19/217 (8%) Query: 48 DKPMYARLGGIVRLLHDSMRELGYDRSLNDV--ASQIGDAQSRLEHIATLTEQAANKVLN 105 D+ +Y +G + R LH+++ + D SQI DA RL ++ +TE+AAN+ ++ Sbjct: 47 DRGLYQEVGKLTRELHNAIVDFQIDPHSPHAQEMSQIADATDRLSYVVEMTEKAANRTMD 106 Query: 106 ALDSGMPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKAR 165 ++ P ++L + +++++ W R ++ D F++LA ++F E+ ++ Sbjct: 107 LVEQSAPLVNQLGDDSRELHQEWQRFMRREIDADGFRELAKRIEQFLVRSGENAGQLSSQ 166 Query: 166 MLEIMMAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGP 225 + +I++AQD+QD+TGQ+IK++ + T E L +L+ + A IE + VS+ + Sbjct: 167 LNDILLAQDYQDLTGQVIKRVTKLVTEVESNLVKLVWMAGQVDRYAGIEHDH-VSMRHQA 225 Query: 226 ASPGTAM----------------GQTDVDDLLDSLGF 246 A +A GQ DVDDLL SLGF Sbjct: 226 ALERSAKGEGPQVAAEKREDVVSGQDDVDDLLSSLGF 262