BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0034.p (276 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0598 [G] COG0395 ABC-type sugar transport system, permease com... 184 2e-46 AGpA79 [G] COG0395 ABC-type sugar transport system, permease com... 166 6e-41 SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 161 1e-39 Rv2317 [G] COG0395 ABC-type sugar transport system, permease com... 155 7e-38 MT2380 [G] COG0395 ABC-type sugar transport system, permease com... 155 7e-38 CAC0428 [G] COG0395 ABC-type sugar transport system, permease co... 155 1e-37 Cgl1351 [G] COG0395 ABC-type sugar transport system, permease co... 154 2e-37 BH1078 [G] COG0395 ABC-type sugar transport system, permease com... 152 1e-36 Rv2834c [G] COG0395 ABC-type sugar transport system, permease co... 148 1e-35 MT2900 [G] COG0395 ABC-type sugar transport system, permease com... 148 1e-35 >TM0598 [G] COG0395 ABC-type sugar transport system, permease component Tma Thermotoga maritima Length = 277 Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%) Query: 56 LQNFVNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQ 115 QN+V+AW AAPFPRY+ NTF + T ++V A+LAAYAF+ F G + +F L L Sbjct: 58 FQNYVDAWNAAPFPRYYFNTFFVATTTTLLEVVTASLAAYAFSWMVFPGRDFIFGLFLAT 117 Query: 116 LMVMPDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVE 175 +M+ ++L+V N+ T++ LG DT ++ +P+ S F IFLLRQ F T+PREL +AA ++ Sbjct: 118 MMIPGEVLLVPNFITISKLGWIDTYYALIIPWIVSVFAIFLLRQHFLTIPRELFDAAKID 177 Query: 176 GASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSST 235 G S W+ L Q+ VPL++P I L+ WN FLW LIVTNS + R L VGLQ FSS Sbjct: 178 GCSHWRFLWQMVVPLSKPAVITSALLKFVGSWNAFLWVLIVTNSEKYRTLPVGLQAFSS- 236 Query: 236 DQGVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 D G ++++ AA + P+++ F+ Q+ F+Q R G++ Sbjct: 237 DVGTQYNLLMAAATFSILPVVILFIFTQKYFIQGIARTGLK 277 >AGpA79 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 145/260 (55%), Gaps = 5/260 (1%) Query: 20 AWVLALLWLLPLLYALWTAFHPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLV 79 A V LL+L P+LY++W +F + + TL N+ A F RY LN+ ++ Sbjct: 12 ALVAGLLFLSPVLYSIWMSFQ--TVDAYYAGELGFTLDNYARAVGQYNFARYLLNSLIVS 69 Query: 80 TMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDT 139 M+ + AT+AAYAFAR++F+G + +F + LM+ I ++ NY T+ +GL D+ Sbjct: 70 AMVTLLGITFATMAAYAFARYSFKGGDFLFAATVATLMIPSHISLIPNYLTLAKVGLLDS 129 Query: 140 ILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199 + LP ++ F F LRQ + +P+ LDEAA ++GA++ Q+L ++ VPL+RP + Sbjct: 130 YAGLILPAISNGFAAFFLRQYIRGIPKALDEAAYMDGATSLQVLWRIIVPLSRPAIASMA 189 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQG---VDWSIITAATLMTSAPLL 256 L T WNN++WPL+ + L +GL + G +DW ++ AA+ +T P+L Sbjct: 190 LYIFMTEWNNYIWPLVAVGKQDMYTLQIGLARLYRINPGEGLIDWPLVMAASTITILPVL 249 Query: 257 LAFLLFQRQFVQSFMRAGIR 276 L FLL +R V+ ++ Sbjct: 250 LGFLLVERHLVRGITMGAVK 269 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 282 Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 155/277 (55%), Gaps = 9/277 (3%) Query: 7 PFADRH-----RALETVSAWVLALLWLLPLLYALWTAFHPAA--FATRFTLDAPLTLQNF 59 PF R R L V +LA + L PLL+ + AF PAA F++ AP TL NF Sbjct: 8 PFFSRSQVTLVRGLWMVVTAILAFMTLFPLLWIVSIAFKPAAESFSSNLIPQAP-TLDNF 66 Query: 60 VNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVM 119 + PF RY +N+FL+ + L T+A YA AR F G VMF+ + +V Sbjct: 67 IYVLTGVPFIRYMVNSFLVSATVTVVALFFHTMAGYALARLRFPGREVMFLSIFSTFLVS 126 Query: 120 PDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASA 179 ++IV + + +G+ ++ + +P +AFGIFLLRQ + ++P+E++EAA ++GA Sbjct: 127 LPVIIVPLFVIVKAMGMLNSYAGLIIPAIFNAFGIFLLRQYYLSLPKEIEEAARIDGAGY 186 Query: 180 WQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGV 239 W+I V +PL+RPI A ++ +WN+FLWPL +T+ + + +G+ F S Sbjct: 187 WRIYWSVILPLSRPIMSALAILFFLANWNSFLWPLTITSDPDLWVVQLGIANFKS-QYSA 245 Query: 240 DWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 W+ + AA+ + + P L+ F++FQRQ + S +G++ Sbjct: 246 SWNYMMAASTIVAIPTLILFVIFQRQIMDSLKTSGLK 282 >Rv2317 [G] COG0395 ABC-type sugar transport system, permease component Mtu Mycobacterium tuberculosis H37Rv Length = 274 Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 10/259 (3%) Query: 24 ALLWLLPLLYALWTAF---HPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLVT 80 A++ L P L L T+F H A T L P TL N+ + A F R + T L+ Sbjct: 20 AVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAG-FRRAAVVTALMTA 78 Query: 81 MILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTI 140 +IL QL + LAAYAFAR FRG + +F + + LMV + +V Y M LGLR+T Sbjct: 79 VILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPLYLMMAQLGLRNTF 138 Query: 141 LSIGLPY-FASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199 ++ LP+ F S + IFLLR+ F+ +P +L AA ++GA+ +++ V +P +RP+ A Sbjct: 139 WALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVHVVIPSSRPVLAALA 198 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSS--TDQGVDWSIITAATLMTSAPLLL 257 +++V + WNNF+WPL++T+ + R LTV S DQ W+++ AAT + PL+ Sbjct: 199 MITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQ---WTLVMAATTVAIVPLIA 255 Query: 258 AFLLFQRQFVQSFMRAGIR 276 F+ FQR V S + +G++ Sbjct: 256 LFVTFQRHIVASIVVSGLK 274 >MT2380 [G] COG0395 ABC-type sugar transport system, permease component MtC Mycobacterium tuberculosis CDC1551 Length = 274 Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 10/259 (3%) Query: 24 ALLWLLPLLYALWTAF---HPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLVT 80 A++ L P L L T+F H A T L P TL N+ + A F R + T L+ Sbjct: 20 AVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAG-FRRAAVVTALMTA 78 Query: 81 MILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTI 140 +IL QL + LAAYAFAR FRG + +F + + LMV + +V Y M LGLR+T Sbjct: 79 VILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPLYLMMAQLGLRNTF 138 Query: 141 LSIGLPY-FASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199 ++ LP+ F S + IFLLR+ F+ +P +L AA ++GA+ +++ V +P +RP+ A Sbjct: 139 WALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVHVVIPSSRPVLAALA 198 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSS--TDQGVDWSIITAATLMTSAPLLL 257 +++V + WNNF+WPL++T+ + R LTV S DQ W+++ AAT + PL+ Sbjct: 199 MITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQ---WTLVMAATTVAIVPLIA 255 Query: 258 AFLLFQRQFVQSFMRAGIR 276 F+ FQR V S + +G++ Sbjct: 256 LFVTFQRHIVASIVVSGLK 274 >CAC0428 [G] COG0395 ABC-type sugar transport system, permease component Cac Clostridium acetobutylicum Length = 273 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 152/260 (58%), Gaps = 8/260 (3%) Query: 22 VLALLWLLPLLYALWTAFHPA----AFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFL 77 +L L+ ++PL+YAL + P +F RF + + L N+ ++ P ++ +N+F+ Sbjct: 16 ILGLITIVPLIYALCVSLMPQDQIFSFPPRF-IPKGIYLGNYKEVLRSVPIIKFIVNSFI 74 Query: 78 LVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLR 137 + + Q++ +++AA+AF+ F+G ++F+ VL LM+ + ++ NY T+ LG Sbjct: 75 VSLGVTVFQIITSSMAAFAFSFLDFKGKKILFIAVLATLMIPAETTLISNYLTVGSLGWL 134 Query: 138 DTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIA 197 D+ ++ +PY SA GIF++RQ + T+P+EL EAA ++G ++ ++ +P++RP+ + Sbjct: 135 DSYKALIVPYMCSAMGIFMMRQYYLTIPKELYEAAKIDGCGSFGFFTKILMPVSRPVIAS 194 Query: 198 FGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFS-STDQGVDWSIITAATLMTSAPLL 256 FG+ S WN +LWPL+VT+ SR + +G+ + S +Q + +I A ++ P + Sbjct: 195 FGIYSFLVSWNQYLWPLLVTSKESSRTVQIGISMLQFSENQ--SFGLIMAGIVIVLLPSI 252 Query: 257 LAFLLFQRQFVQSFMRAGIR 276 + F++ Q+Q V ++ Sbjct: 253 VIFIIGQKQLVDGMTSGAVK 272 >Cgl1351 [G] COG0395 ABC-type sugar transport system, permease component Cgl Corynebacterium glutamicum Length = 278 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 156/279 (55%), Gaps = 18/279 (6%) Query: 10 DRHRALETVS--AWVLALLWL-LPLLYALWTAFHPAA---------FATRFTLDAPLTLQ 57 DR+ ++ + VLA+L++ LPL++ + T+F + F + F D Sbjct: 5 DRNVLVKIMGYVGMVLAILFIGLPLVFIVLTSFKQQSEIYTQPVTWFPSEFNFD------ 58 Query: 58 NFVNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLM 117 N+ N ++ PF YF N+ ++ ++ +++L ++AYA + F G N++F+LV+ LM Sbjct: 59 NYANVFERVPFLNYFRNSIIITVILCLVKIILGVISAYALSILRFPGRNLVFLLVISALM 118 Query: 118 VMPDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGA 177 V ++ ++ NY ++ LG RDT I +P AFG FL+R F ++P EL EAA ++ Sbjct: 119 VPSEVTVISNYALVSQLGWRDTYQGIIVPLAGIAFGTFLMRNHFMSIPSELIEAARMDHC 178 Query: 178 SAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQ 237 +++L +V +P++ P +AF +++V WN +LWP ++ + S L +GL + + + Sbjct: 179 GHFRLLWKVLLPISMPTLVAFSMITVVNEWNQYLWPFLMAETDNSATLPIGLTMLQNNEG 238 Query: 238 GVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 +W + AAT+MT P+L+ FL Q+ ++ + ++ Sbjct: 239 VSNWGPVMAATIMTMLPVLVMFLALQQYMIKGLISGAVK 277 >BH1078 [G] COG0395 ABC-type sugar transport system, permease component Bha Bacillus halodurans Length = 270 Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 141/254 (55%), Gaps = 1/254 (0%) Query: 24 ALLWLLPLLYALWTAFHPAA-FATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLVTMI 82 ALL P++YA + +F A +R + + + N+ + P Y N+F++ + Sbjct: 17 ALLIFFPIVYAFFVSFMSGAEVLSRAFFPSSVNVDNYEKVFSTVPLLHYLQNSFIVSITV 76 Query: 83 LAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTILS 142 + QL++ +L+AY FA F+G +F+L + LM+ + ++ N+ T+ LG ++ L Sbjct: 77 MIGQLIVCSLSAYVFAFIPFKGRTFVFLLFISTLMIPWEAAMIPNFLTIQKLGWLNSYLG 136 Query: 143 IGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFGLVS 202 + +P+FA AFG FLLRQ FKT+P+EL EAA VEG S +Q +V +P A+ + G+ Sbjct: 137 MTVPFFALAFGTFLLRQHFKTIPKELHEAAQVEGLSPFQFFYKVCLPYAKTSLVTLGIYG 196 Query: 203 VSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITAATLMTSAPLLLAFLLF 262 T WN +LWPL+VT + R + +GL+ + + +W ++ A ++ P LL L Sbjct: 197 FLTTWNMYLWPLLVTTNDRKRTVQIGLKQLQTVEVATEWGVVMAGVVVVIIPTLLLLFLG 256 Query: 263 QRQFVQSFMRAGIR 276 Q+Q + + I+ Sbjct: 257 QKQLQKGLTQGAIK 270 >Rv2834c [G] COG0395 ABC-type sugar transport system, permease component Mtu Mycobacterium tuberculosis H37Rv Length = 275 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 124/220 (56%) Query: 57 QNFVNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQL 116 QN+ A + PF + N+ ++ +++ + L L+A+ F G +F++++ L Sbjct: 55 QNYRTATEQIPFWTFLRNSLIITSVLAVVKFTLGVLSAFGLVFVRFPGRTAVFLVIIAAL 114 Query: 117 MVMPDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEG 176 MV I ++ NY ++ LGLR+T I LP AFG FL+R F ++P E+ EAA ++G Sbjct: 115 MVPNQITVISNYALISHLGLRNTFAGIILPLAGVAFGTFLMRNHFLSLPAEIIEAARMDG 174 Query: 177 ASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTD 236 A WQ+L++V +P++RP +A G+++V WN +LWP ++++ PL +GL + Sbjct: 175 ARWWQLLLRVVLPMSRPTMVAVGVITVVNEWNEYLWPFLMSDDESVAPLPIGLTFLQQAE 234 Query: 237 QGVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 +W + A TL+ P+LL F+ QRQ ++ ++ Sbjct: 235 GVTNWGPVMAVTLLAMLPILLVFIALQRQMIKGLTSGAVK 274 >MT2900 [G] COG0395 ABC-type sugar transport system, permease component MtC Mycobacterium tuberculosis CDC1551 Length = 275 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 124/220 (56%) Query: 57 QNFVNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQL 116 QN+ A + PF + N+ ++ +++ + L L+A+ F G +F++++ L Sbjct: 55 QNYRTATEQIPFWTFLRNSLIITSVLAVVKFTLGVLSAFGLVFVRFPGRTAVFLVIIAAL 114 Query: 117 MVMPDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEG 176 MV I ++ NY ++ LGLR+T I LP AFG FL+R F ++P E+ EAA ++G Sbjct: 115 MVPNQITVISNYALISHLGLRNTFAGIILPLAGVAFGTFLMRNHFLSLPAEIIEAARMDG 174 Query: 177 ASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTD 236 A WQ+L++V +P++RP +A G+++V WN +LWP ++++ PL +GL + Sbjct: 175 ARWWQLLLRVVLPMSRPTMVAVGVITVVNEWNEYLWPFLMSDDESVAPLPIGLTFLQQAE 234 Query: 237 QGVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 +W + A TL+ P+LL F+ QRQ ++ ++ Sbjct: 235 GVTNWGPVMAVTLLAMLPILLVFIALQRQMIKGLTSGAVK 274