BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0016.p (315 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 239 7e-63 AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 219 7e-57 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 219 7e-57 BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella meli... 214 2e-55 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 213 6e-55 SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 211 3e-54 BMEII0345 [K] COG0583 Transcriptional regulator Bme Brucella mel... 208 1e-53 mlr3988 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 193 5e-49 RSp0018 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 144 2e-34 PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 120 6e-27 >PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 239 bits (609), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 130/299 (43%), Positives = 191/299 (63%), Gaps = 4/299 (1%) Query: 11 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 70 M DW++LR FLEL RS L+ AAK+LG H+TV+R ++ E +G+QLF ++ GY+LT Sbjct: 1 MFDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTP 60 Query: 71 DGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 130 G L+++AE +E+T A EE+ S L GQ+R+G TEG G+ LAP +A P Sbjct: 61 AGQALLKHAEAMENTALLAQEEMSQSISPL-GQIRIGVTEGLGSVFLAPRLAQLMRHYPG 119 Query: 131 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKL-SDYVLKLYASRDYLAQHPPIH 189 + V+++ +PRFV+++ EADI++S++RP S + V+T+L + Y L L+AS YL Q PP+ Sbjct: 120 LEVELVSVPRFVSITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLR 178 Query: 190 TMDDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPC 249 DDL +H +IGY+DDL+FS+EL + + FRSTSVVAQ AA AG LAILP Sbjct: 179 DRDDLGRHQWIGYVDDLLFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLAILPH 238 Query: 250 FLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQS 308 F+ + L PVLP++ +I R +W+ E R+ +W +L E + R+ L+G S Sbjct: 239 FMGSRDPLLVPVLPEE-SIQREYWMSTRRELHRSVRLRVVWDFLLELCQREREVLLGPS 296 >AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 219 bits (558), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 112/280 (40%), Positives = 167/280 (59%) Query: 14 WDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGY 73 WD+L+ FL + R+ L AA+ L H+TVSR + R E + ++LF+RN GY+LT G Sbjct: 7 WDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTVGR 66 Query: 74 RLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITV 133 RLV+ E++E+ ++ S L G VRL A EGF F + F A +PHI V Sbjct: 67 RLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAATHPHIMV 126 Query: 134 DMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDD 193 +M+ + + + LS+ EAD++V+++ P +G Y+ ++ DY L +YASR YLA HP I +D Sbjct: 127 EMVTIQQIMALSRKEADVAVTLDPPKAGPYINEQIIDYTLHIYASRSYLAGHPKITRRED 186 Query: 194 LAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQ 253 L H FIGY+ DL+FS L Y V P F+S+S+ AQ TA +GR L ILP F+A Sbjct: 187 LPNHFFIGYVQDLIFSPGLDYMRDVWPGLRPNFQSSSIFAQLTATLSGRGLCILPNFIAA 246 Query: 254 QSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYL 293 + +L VLP + + R +WL + + +V RV +L ++ Sbjct: 247 RFPDLQMVLPGDVELRRGYWLTSHQDFANVPRVRSLMDFI 286 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 177/294 (60%), Gaps = 1/294 (0%) Query: 12 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 71 ++WD++RIFL + RS ++ A+K+LG++H+T+SRR+ E+ + +QLF R +G ++T + Sbjct: 1 MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60 Query: 72 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 131 G R + AE++E+ + A LG ++ ++G VR+GA +G G LAP + AR P + Sbjct: 61 GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120 Query: 132 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTM 191 + ++P+PR +LS+ EADI+++IERP G + +KL+DY L LYAS DYLA H + Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDV 180 Query: 192 DDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 251 + L +H IGY++DL+FS L Y + D AF +S Q A +G + IL ++ Sbjct: 181 EALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI 240 Query: 252 AQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLM 305 A Q EL ++P + I+RS+W R + RV + +L+E V R + Sbjct: 241 AGQYPELMRIMP-HLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI 293 >BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 175/289 (60%), Gaps = 1/289 (0%) Query: 10 HMLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLT 69 + ++WD++RIFL + RS ++ AA++LG++H+TV+RR+ E + + L R +G LT Sbjct: 14 NAMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLT 73 Query: 70 ADGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNP 129 G + AE++E+ + +A ++G + +SG VR+GA +GFG LAP +A + P Sbjct: 74 HAGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYP 133 Query: 130 HITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIH 189 +T+ ++P+PR +LS+ EADI++++ERP G V +L DY L LYA R YL ++ Sbjct: 134 DLTIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLYAHRSYLEENSTPK 193 Query: 190 TMDDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPC 249 + +DL +H IGY++DLV + L Y ++ D AF +S + Q A AG + IL Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIGILHS 253 Query: 250 FLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVE 298 F+A +L PVLP ++ I R++WL R + RV+A+ + + E VE Sbjct: 254 FIACADPDLVPVLPDRV-IHRAYWLAYHESARTLRRVTAVSALISELVE 301 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 178/286 (62%), Gaps = 1/286 (0%) Query: 12 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 71 ++WD++R+FL + R+ ++ A+K+LGI+H+T+SRR+ EE++ ++L R +G +LTA+ Sbjct: 1 MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60 Query: 72 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 131 G AE++E+ + AA ++G ++ ++G VR+GA +GFG LAP + AR P + Sbjct: 61 GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120 Query: 132 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTM 191 + ++P+PR +LS+ EADI+++IERP G V +KL+DY L LYAS +YL ++ T+ Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPGTV 180 Query: 192 DDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 251 DDL H IGY++DL+F+ L + V +F +S + Q A + + IL ++ Sbjct: 181 DDLKNHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHNYI 240 Query: 252 AQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECV 297 A+Q EL +LP + I R++W R + RV + ++L+E V Sbjct: 241 ARQYPELVRLLPDR-TIRRAYWTTYHESARDLVRVRTVAAFLQEMV 285 >SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 315 Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 168/295 (56%) Query: 14 WDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGY 73 WD+L+ FL + R+ L AA++L H+TVSRR+ R E + +LF+RN GY LT G Sbjct: 7 WDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTTMGQ 66 Query: 74 RLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITV 133 R VE AE++E ++ + G VRL EGFG F LA + F R P+I++ Sbjct: 67 RFVETAERMERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLGEFAERYPNISL 126 Query: 134 DMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDD 193 +++ + + ++LS+ EADI+V++ P +G Y L+ Y L +Y +R YLA PPI T D Sbjct: 127 ELVAIQQIMSLSRKEADIAVALAAPKAGAYHAEVLTPYTLHVYGARSYLAGQPPIRTRSD 186 Query: 194 LAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQ 253 L H F+GYIDD++F+ L Y + P F+S+S++ Q A G L +LP F+A+ Sbjct: 187 LGSHRFVGYIDDMIFTPGLDYLGEIQPGLRAHFQSSSILTQLKAVRQGLGLCVLPHFMAK 246 Query: 254 QSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQS 308 L VLP +I + R++WL+ + + RV A+ +L + NR + ++ Sbjct: 247 DEPNLEIVLPDEIELKRTYWLICHRDLIAIPRVRAVRDFLVDAAVENRGCFLRET 301 >BMEII0345 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 316 Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 167/294 (56%) Query: 14 WDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGY 73 WD+L+ FL + R+ L AA++L H TV RR+ R E+ + ++LF+RN GY LT G Sbjct: 18 WDDLQYFLAVARTGQLSTAARQLRTSHVTVLRRIDRLEQALSTKLFERNPRGYLLTPMGE 77 Query: 74 RLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITV 133 RLVE AE +E E G+ + LSG VRL EGFG F LA + P + V Sbjct: 78 RLVEPAEVMEREAMKFQTEATGNLAALSGVVRLSTLEGFGNFFLADRLPVLAQSYPSLFV 137 Query: 134 DMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDD 193 +++ + + ++LS+ E ++S+++ P +G Y KL Y L +Y RDYLA+HPPI T +D Sbjct: 138 EVVTIQQIMSLSRRETELSITLHMPRNGPYHSEKLMPYRLFIYGHRDYLARHPPIRTRED 197 Query: 194 LAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQ 253 + H FIGYIDD+VF+ L Y + P ++S+S+ AQ A G L +LP F+A Sbjct: 198 MTGHPFIGYIDDMVFTPGLDYMREILPGQRCTYQSSSIHAQLIATQTGYGLCVLPYFIAS 257 Query: 254 QSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQ 307 + EL PVLP+++ + R +W+ + R+ + ++ V + +G+ Sbjct: 258 KYPELVPVLPREMHLVREYWMSCHVDVMAAPRIRVISDFMIRAVRESSSMFLGE 311 >mlr3988 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 293 Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 168/295 (56%), Gaps = 3/295 (1%) Query: 12 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 71 ++WD++RIFL + R+ ++ AA++L ++H+TVSRR+ E+ + ++LF R G +LT Sbjct: 1 MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60 Query: 72 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 131 G R ++ AE++E + AA + G +SG VR+GA +GFG LA + A + + Sbjct: 61 GERFLDIAERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHREL 120 Query: 132 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTM 191 T+ ++P+PR +LS+ EADI++++ERP G V KL DY L L+ASR Y + T Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDYSLGLFASRAYADANGLPKTA 180 Query: 192 DDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 251 +L +H IGY+ DL+ S L Y + D +F +S + Q A +G + IL F+ Sbjct: 181 AELGRHPLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFV 240 Query: 252 AQQSEELAPVLPQQIA-ITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLM 305 A+ EL V +A I R++WLV R + R+ + ++ + VE R + Sbjct: 241 ARSMPELVAV--DAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVERERSLFL 293 >RSp0018 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 302 Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/308 (33%), Positives = 147/308 (47%), Gaps = 11/308 (3%) Query: 1 MNAKGNYGDHMLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFD 60 + A G+ L WD++R FL L R L AA++LG++H+TV+RR E+ +G +LFD Sbjct: 3 VRAAGSEPSSSLQWDDVRHFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFD 62 Query: 61 RNNHGYKLTADGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPH 120 R G++LTA+G L E A ++E A + L G VR+ A + V+AP+ Sbjct: 63 RLPRGWRLTAEGGALAEQAGRMEQE-AAGLARIAAGAGNLRGTVRVSAPPTLASHVIAPN 121 Query: 121 IAHFCARNPHITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRD 180 +A R P I + +L R NL HEAD++V + RP S L D LYA+ Sbjct: 122 LATLRRRWPGIDLVLLGEKRNANLMAHEADLAVRLSRPTSAALATRPLGDLGYGLYAT-- 179 Query: 181 YLAQHPPIHTMDDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACA 240 P + T + A+ FIGY D L + R+ A R + + A + AA Sbjct: 180 -----PEVLTRPE-AEWEFIGYDDTLRHMPQQRWLAAYAGARRMVLRCSDLAAIHRAALT 233 Query: 241 GRALAILPCFL--AQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVE 298 G +A LP FL A+ L + A+ RS WLV + R RV A+ L E Sbjct: 234 GLGVAALPHFLVSAETGTPLRRLPVSDPALQRSIWLVIHPDVRRSPRVRAVADGLIALFE 293 Query: 299 LNRDFLMG 306 R L G Sbjct: 294 AQRHALAG 301 >PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 291 Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 4/287 (1%) Query: 12 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 71 ++WD+ R+FL L R L AA+ L +D +TV RR+ E +GS LF R + GY LT Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 72 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 131 G E AE++E + G + +LSG+VRL T+ + P +A +P I Sbjct: 61 GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120 Query: 132 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTM 191 V + V+L K E DI++ RP + + ++ KL+ + + L+AS DYL ++ Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRPENPDLILRKLASWPMGLFASADYLRRNGVPVPG 180 Query: 192 DDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 251 + H + Y EL D S + A G L LP ++ Sbjct: 181 ERFRGHDLVMYEPYWHSQRELTLGGEPIRDGRVVIAVNSNMMVRQALARGLGLCELPLYM 240 Query: 252 AQQSEELAPVLPQQIAITRSF--WLVASSEQRHVARVSALWSYLREC 296 ++ + L V PQ+ R + W+V + RH ARV A+ L E Sbjct: 241 GER-DGLVRVWPQR-ERRRPYEVWMVTHKDLRHTARVRAVIERLVEA 285