BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0010.p (191 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1069 [J] COG0231 Translation elongation factor P (EF-P)/trans... 224 1e-58 NMA1133 [J] COG0231 Translation elongation factor P (EF-P)/trans... 206 4e-53 NMB0937 [J] COG0231 Translation elongation factor P (EF-P)/trans... 205 5e-53 PA2851 [J] COG0231 Translation elongation factor P (EF-P)/transl... 200 2e-51 FN0720 [J] COG0231 Translation elongation factor P (EF-P)/transl... 159 3e-39 CAC2094 [J] COG0231 Translation elongation factor P (EF-P)/trans... 105 4e-23 all5058 [J] COG0231 Translation elongation factor P (EF-P)/trans... 90 3e-18 BH2799 [J] COG0231 Translation elongation factor P (EF-P)/transl... 89 4e-18 L0377 [J] COG0231 Translation elongation factor P (EF-P)/transla... 89 7e-18 BMEI0327 [J] COG0231 Translation elongation factor P (EF-P)/tran... 89 8e-18 >RSc1069 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Rso Ralstonia solanacearum Length = 188 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 108/187 (57%), Positives = 139/187 (74%), Gaps = 6/187 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKF 60 +K A+E+R GN+ M+ + PM+VL+++ + S R K K KNLLT +P ESVF+ DDK Sbjct: 3 LKIAQELRAGNVFMIGNDPMVVLKTEYSRSGRNAAVVKMKYKNLLTGAPSESVFKADDKM 62 Query: 61 DVVVLDKKPVTYSYFADPLYVFMDEEYNQYEIEGENMGDAIGYLKDGMQCEAVFYEGKAI 120 D ++LDKK TYSYFADP+YVFMD +YNQYE+E ++MGDAI YL+DGM E FY KAI Sbjct: 63 DQIILDKKECTYSYFADPMYVFMDTDYNQYEVEADSMGDAIHYLEDGMAAEVTFYNEKAI 122 Query: 121 SVEMPTTIVRKVAYSEPAVKGNT-SGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEID 179 SVE+PTT+VR++ Y+EPAVKG+T SG VLK AKI+ E + VPLF S D IEID Sbjct: 123 SVELPTTLVREIEYTEPAVKGDTSSGKVLKMAKIKGGFE-----IQVPLFCSTGDKIEID 177 Query: 180 TRTNEYK 186 TRT+EY+ Sbjct: 178 TRTHEYR 184 >NMA1133 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) NmA Neisseria meningitidis Z2491 Length = 186 Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 100/189 (52%), Positives = 137/189 (72%), Gaps = 7/189 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKF 60 MK A+E+R GN+ MV + PM+V +++ R+ K+KNLLT + E++++ DDKF Sbjct: 1 MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNLLTGAASETIYKADDKF 60 Query: 61 DVVVLDKKPVTYSYFADPLYVFMDEEYNQYEIEGENMGDAIGYLKDGM--QCEAVFYEGK 118 DVV+L +K TYSYFADP+YVFMDEE+NQYEIE +N+GDA+ ++ DGM QCE FYEG Sbjct: 61 DVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALKFIVDGMEDQCEVTFYEGN 120 Query: 119 AISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEI 178 ISVE+PT IVR+V Y+EPAVKG+TSG V+K A++ + +I VM ++ D IEI Sbjct: 121 PISVELPTIIVREVEYTEPAVKGDTSGKVMKTARL---VGGTEIQVMS--YIENGDKIEI 175 Query: 179 DTRTNEYKK 187 DTRT E++K Sbjct: 176 DTRTGEFRK 184 >NMB0937 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Nme Neisseria meningitidis MC58 Length = 186 Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 137/189 (72%), Gaps = 7/189 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKF 60 MK A+E+R GN+ MV + PM+V +++ R+ K+KNLLT + E++++ DDKF Sbjct: 1 MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNLLTGAASETIYKADDKF 60 Query: 61 DVVVLDKKPVTYSYFADPLYVFMDEEYNQYEIEGENMGDAIGYLKDGM--QCEAVFYEGK 118 DVV+L +K TYSYFADP+YVFMDEE+NQYEIE +N+GDA+ ++ DGM QCE FYEG Sbjct: 61 DVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALKFIVDGMEDQCEVTFYEGN 120 Query: 119 AISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEI 178 ISVE+PT IVR+V Y+EPAVKG+TSG V+K A++ + +I VM ++ D +EI Sbjct: 121 PISVELPTIIVREVEYTEPAVKGDTSGKVMKTARL---VGGTEIQVMS--YIENGDKVEI 175 Query: 179 DTRTNEYKK 187 DTRT E++K Sbjct: 176 DTRTGEFRK 184 >PA2851 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Pae Pseudomonas aeruginosa Length = 188 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 97/193 (50%), Positives = 133/193 (68%), Gaps = 7/193 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKF 60 MK A+E R G + ++ P ++ +++ N S R K K+KNLLT + E+VF+ DDK Sbjct: 1 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKL 60 Query: 61 DVVVLDKKPVTYSYFADPLYVFMDEEYNQYEIEGENMGDAIGYLKDGMQ--CEAVFYEGK 118 + ++LD+K VTYSYFADPLYVFMD E+NQYEIE +++ + +++DGM CEAVFY K Sbjct: 61 EPIILDRKEVTYSYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDK 120 Query: 119 AISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEI 178 ISVE+PTTIVR++AY+EPAV+G+TSG V+K A++ N E + V F D IEI Sbjct: 121 VISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAE-----LQVSAFCEIGDSIEI 175 Query: 179 DTRTNEYKKVVRG 191 DTRT EYK V+ Sbjct: 176 DTRTGEYKSRVKA 188 >FN0720 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Fnu Fusobacterium nucleatum Length = 187 Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 127/191 (66%), Gaps = 6/191 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKF 60 MK A+E+R G+ I + + P +VL+++ N S R K+KMKNL++ + ++V++ DDK Sbjct: 1 MKIAQELRAGSTIKIGNDPFVVLKAEYNKSGRNAAVVKFKMKNLISGNISDAVYKADDKM 60 Query: 61 DVVVLDKKPVTYSYFADPLYVFMD-EEYNQYEIEGENMGDAIGYLKDGMQCEAVFYEGKA 119 D + LDK YSY Y+F + E + + E++GE++GDA+ YL++ M + V+YE A Sbjct: 61 DDIKLDKVKAIYSYQNGDSYIFSNPETWEEIELKGEDLGDALNYLEEEMPLDVVYYESTA 120 Query: 120 ISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEID 179 ++VE+PT + R+V Y+EP ++G+TSG V+K A+I E V VPLFV Q + I+ID Sbjct: 121 VAVELPTFVEREVTYTEPGLRGDTSGKVMKPARINTGFE-----VQVPLFVEQGEWIKID 175 Query: 180 TRTNEYKKVVR 190 TRTNEY + V+ Sbjct: 176 TRTNEYVERVK 186 >CAC2094 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Cac Clostridium acetobutylicum Length = 186 Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 8/155 (5%) Query: 38 KWKMKNLLTNSPLESVFRGDDKFDVVVLDKKPVTYSYFADPLYVFMDEE-YNQYEIEGEN 96 + K+KN++T + E+ F K V+++K + Y Y + Y FMD+E Y Q + + Sbjct: 38 RTKLKNVITGAVTETTFNPTAKMQEAVIERKEMQYLYSDESFYYFMDQETYEQIPLSFDQ 97 Query: 97 MGDAIGYLKDGMQCEAVFYEGKAISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIE-N 155 + +AI YLK+ M FY+G+A SVE P + K+ EP VKGNT+ NV+K A +E N Sbjct: 98 VENAIKYLKENMFATIKFYKGEAFSVEAPNFVELKIVSCEPGVKGNTTSNVMKPATLETN 157 Query: 156 AIEANQITVMVPLFVSQDDDIEIDTRTNEYKKVVR 190 A+ V VPLFV++ + I +DTRT EY + V+ Sbjct: 158 AV------VQVPLFVNEGETIRVDTRTGEYMERVQ 186 >all5058 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Nos Nostoc sp. PCC 7120 Length = 185 Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 41 MKNLLTNSPLESVFRGDDKFDVVVLDKKPVTYSYFADPLYVFMD-EEYNQYEIEGENMGD 99 +KN+ + LE FR + L+K + ++Y +VFMD E Y + + +GD Sbjct: 41 LKNVQSGKVLEKTFRAGETVPQATLEKITMQHTYKEGDEFVFMDMESYEEGRLSAAQIGD 100 Query: 100 AIGYLKDGMQCEAVFYEGKAISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEA 159 + YLK+GM+ + + + + VE+ ++V +V ++P VKG+T+ K A +E Sbjct: 101 RVKYLKEGMEVNVIRWGEQVLEVELANSVVLEVIQTDPGVKGDTATGGTKPAIVETG--- 157 Query: 160 NQITVMVPLFVSQDDDIEIDTRTNEY 185 TVMVPLF+SQ + I+IDTR ++Y Sbjct: 158 --ATVMVPLFISQGERIKIDTRDDKY 181 >BH2799 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Bha Bacillus halodurans Length = 185 Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 6/149 (4%) Query: 38 KWKMKNLLTNSPLESVFRGDDKFDVVVLDKKPVTYSYFADPLYVFMDEE-YNQYEIEGEN 96 + K++NL T + E FR +K ++ + + Y Y + ++ FMD E + Q E+ Sbjct: 38 RSKLRNLRTGAVQEKTFRAGEKVSKAHIENRRMQYLYASGDVHTFMDNETFEQLELSTAQ 97 Query: 97 MGDAIGYLKDGMQCEAVFYEGKAISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENA 156 + + +LK+ M+ + Y+G+ + VE+P T+ V +EP +KG+T+ K A +E Sbjct: 98 IEHELKFLKENMEVHVISYQGETLGVEVPNTVELTVTETEPGIKGDTASGGTKPATLETG 157 Query: 157 IEANQITVMVPLFVSQDDDIEIDTRTNEY 185 +TV VP FV++ D + IDTR+ +Y Sbjct: 158 -----LTVQVPFFVNEGDVLVIDTRSGDY 181 >L0377 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Lla Lactococcus lactis Length = 185 Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 6/188 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKF 60 M AK+++ G + K + V+ + + + + K+K++ + S + +R +DKF Sbjct: 1 MVLAKDLKSGMTFLNGEKLLRVMEASHHKPGKGNTIMRMKLKDVRSGSTFDDTYRPEDKF 60 Query: 61 DVVVLDKKPVTYSYFADPLYVFMDEE-YNQYEIEGENMGDAIGYLKDGMQCEAVFYEGKA 119 + V++ Y Y D + FM+ E Y QYEI E + D + Y+ + + FY + Sbjct: 61 EQAVIETVTAQYLYSMDGIANFMNNETYEQYEIPVEQVKDELLYVLENTDVKIQFYGTEV 120 Query: 120 ISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEID 179 I +++PTT+V +V ++P++KG T K A +E + N VP FV +EI+ Sbjct: 121 IGIQLPTTVVLEVTETQPSIKGATVTGSGKPATMETGLVVN-----VPDFVEAGTKLEIN 175 Query: 180 TRTNEYKK 187 T+T EY K Sbjct: 176 TQTGEYLK 183 >BMEI0327 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Bme Brucella melitensis Length = 186 Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 8/187 (4%) Query: 6 EIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPLESVFRGDDKFDVVVL 65 EIR GN+I + + ++++ + G + ++KNL+ + L FR + + V L Sbjct: 7 EIRPGNVIEHEGGLWVAVKTNAVKPGKGGAYNQVELKNLINGTKLNERFRAAESVERVRL 66 Query: 66 DKKPVTYSYFADPLYVFMDEE-YNQYEIEGENMGDAIGYLKDGMQCEAVFYEGKAISVEM 124 ++K ++ Y +FMD E Y Q E++ + +GD +L+DGM YE K I + + Sbjct: 67 EQKDFSFLYEQGEALIFMDTETYEQLELQKDFVGDRAAFLQDGMMVTVELYEEKPIGIRL 126 Query: 125 PTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEIDTRTNE 184 P + + ++P VKG T+ + K A +EN I + VP F++ + + +D TNE Sbjct: 127 PDQVTLAITEADPVVKGQTAASSYKPAVLENGIR-----IPVPPFIASGERVIVD--TNE 179 Query: 185 YKKVVRG 191 + R Sbjct: 180 LTYISRA 186