BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0008.p (161 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella me... 147 6e-36 SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu... 143 1e-34 RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia sol... 141 5e-34 PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae... 140 1e-33 CC0915 Non COG 135 3e-32 VCA1005 [K] COG1846 Transcriptional regulators Vch Vibrio cholerae 134 1e-31 SMc00098 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu... 134 1e-31 AGc1544 [K] COG1846 Transcriptional regulators Atu Agrobacterium... 134 1e-31 BS_ykmA [K] COG1846 Transcriptional regulators Bsu Bacillus subt... 130 1e-30 CAC1569 [K] COG1846 Transcriptional regulators Cac Clostridium a... 126 2e-29 >BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella melitensis Length = 157 Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/139 (53%), Positives = 102/139 (73%), Gaps = 1/139 (0%) Query: 18 DQALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRL 77 D L L LCFA+YS + A+++AY+ +LAPLD+TYPQ+LVM+VLWE+D TVSE+G RL Sbjct: 13 DTNLDLADMLCFAVYSTANALSRAYQPILAPLDLTYPQFLVMLVLWERDDCTVSEIGARL 72 Query: 78 FLDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSCMLPS 137 LDSGTLTPLLKR+EA G + R RD DER+V ++LT GR LRE+A++VP Q+ C Sbjct: 73 NLDSGTLTPLLKRLEAAGRITRRRDPRDERQVRITLTDEGRKLREQAESVPEQIMCATGQ 132 Query: 138 -LDQVKNLVVELKQVRKGL 155 + ++++L L ++R L Sbjct: 133 PVSELQDLRNRLMKIRNHL 151 >SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti Length = 138 Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/136 (56%), Positives = 96/136 (70%), Gaps = 5/136 (3%) Query: 23 LDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLFLDSG 82 LD+ LCFA+YSA+ A T+ YK LL LD+TYPQYLVM+ LWEKD TV LG +LFL+S Sbjct: 3 LDNFLCFAIYSANHAFTRVYKPLLDELDLTYPQYLVMVALWEKDDQTVGSLGEKLFLESS 62 Query: 83 TLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQM---SCMLPSLD 139 TLTP+LKR+EAMG + RTRD DER+V V LT GRALREKA VP+ + + M P+ Sbjct: 63 TLTPMLKRLEAMGYILRTRDKADERQVRVRLTETGRALREKASRVPIGIADATGMEPA-- 120 Query: 140 QVKNLVVELKQVRKGL 155 +V L E+ +R L Sbjct: 121 EVARLKREIAALRASL 136 >RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum Length = 153 Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 69/121 (57%), Positives = 90/121 (74%), Gaps = 3/121 (2%) Query: 21 LLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLFLD 80 L LD QLCFA+YS + + K Y+ LL PL +TYPQYLVM+VLWE+D +TVSE+G RLFLD Sbjct: 13 LALDQQLCFALYSTMIGLNKVYRGLLKPLGLTYPQYLVMLVLWERDALTVSEIGERLFLD 72 Query: 81 SGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSCMLPSLDQ 140 S TLTP+LKR+EA GL+ R R DER+V+VSLT G+ L+ +AK VP C+ +++ Sbjct: 73 SPTLTPMLKRLEAAGLIGRQRSDADERQVIVSLTAEGQRLKHRAKDVP---GCVAAAMEC 129 Query: 141 V 141 V Sbjct: 130 V 130 >PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 151 Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 99/142 (69%), Gaps = 7/142 (4%) Query: 19 QALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLF 78 + L LD+QLCFA+YS SL MTK YK LL L +TYPQY+ M+VLWE+D +TV E+ R+ Sbjct: 10 EQLKLDNQLCFALYSTSLQMTKVYKPLLQALGLTYPQYIAMLVLWERDGLTVGEISARML 69 Query: 79 LDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSCMLPS- 137 D G+LTPLLKR+E GL+ RTR +EDER VL+ LT GRAL+ +A+++P +C+L S Sbjct: 70 TDPGSLTPLLKRLEGEGLITRTRSSEDERVVLLRLTDKGRALQRQAESIP---ACILEST 126 Query: 138 ---LDQVKNLVVELKQVRKGLQ 156 L Q+ L EL +R LQ Sbjct: 127 GLDLPQLVALKDELLALRGNLQ 148 >CC0915 Non COG Length = 148 Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 1/129 (0%) Query: 7 TQPPLLTEELIDQALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKD 66 +Q P +++ + + L LD+QLCFA+Y A+ MT+ Y+ LL L +TYPQYL M+VLWE Sbjct: 2 SQKPASSDQPV-EILRLDNQLCFALYGAANRMTRLYRPLLDALGLTYPQYLAMLVLWEAS 60 Query: 67 QVTVSELGGRLFLDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKT 126 TV LG L LDS TLTPLLKR+EA GL+ R RD EDERRV+V+LT GRALR++A T Sbjct: 61 PRTVGALGEALDLDSSTLTPLLKRLEAGGLVTRDRDPEDERRVIVALTDKGRALRDQAVT 120 Query: 127 VPLQMSCML 135 +P ++ C L Sbjct: 121 IPEKVFCAL 129 >VCA1005 [K] COG1846 Transcriptional regulators Vch Vibrio cholerae Length = 152 Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 64/113 (56%), Positives = 89/113 (78%) Query: 21 LLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLFLD 80 LLL++Q+CF +YSAS A+ +AY+ LL LDITY QYLV++VLW+++ + V +LG +L LD Sbjct: 16 LLLENQVCFPLYSASNAVIRAYRPLLEQLDITYSQYLVLLVLWQQNGINVKDLGIKLHLD 75 Query: 81 SGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSC 133 SGTLTPLLKR+EA G++ R R + DER + LTPAG AL+E+A++VP +M C Sbjct: 76 SGTLTPLLKRLEAKGIVERRRSSSDERVRELFLTPAGFALQEQARSVPNEMLC 128 >SMc00098 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti Length = 158 Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 93/137 (67%), Gaps = 4/137 (2%) Query: 18 DQALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRL 77 D+AL L QLCFA+YSA+ A +AYK LL +TYPQYLV++ LW++D++TV +G L Sbjct: 13 DEALALGRQLCFAVYSAAHAFNRAYKPLLDRFGLTYPQYLVLLTLWQQDRMTVKRIGEEL 72 Query: 78 FLDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKA----KTVPLQMSC 133 LDSGTL+PLLKR+EA G + R RDA DER+V+VSLT GR L+ +A + + C Sbjct: 73 GLDSGTLSPLLKRLEAAGYVRRVRDAADERQVIVSLTDGGRELKAEAFGILRDIGSASGC 132 Query: 134 MLPSLDQVKNLVVELKQ 150 L + ++++ + L Q Sbjct: 133 SLEEVGELRDALHRLTQ 149 >AGc1544 [K] COG1846 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 152 Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 93/142 (65%), Gaps = 4/142 (2%) Query: 13 TEELIDQALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSE 72 E+ ++ L LD Q+CFA+Y A+ A T+AYK LL P+ +TYPQYLVMM LWEK+ TV Sbjct: 6 NEKTMESLLRLDQQICFALYGAAHAFTRAYKPLLDPIGLTYPQYLVMMALWEKETSTVKA 65 Query: 73 LGGRLFLDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKA----KTVP 128 LG L LDSGTL+PLLKR+E GL+ R R DER+VLV+LTP G L+++ + Sbjct: 66 LGEMLGLDSGTLSPLLKRLEHAGLITRKRGTVDERQVLVALTPKGADLKKEGVKIMAAIG 125 Query: 129 LQMSCMLPSLDQVKNLVVELKQ 150 C L L Q+++ V LK+ Sbjct: 126 GATGCGLEELAQLRDQVNALKE 147 >BS_ykmA [K] COG1846 Transcriptional regulators Bsu Bacillus subtilis Length = 147 Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 61/106 (57%), Positives = 81/106 (76%) Query: 23 LDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLFLDSG 82 L++QLCF +Y++S MTK YK LL L+ITYPQYL +++LWE + +TV ++G +L+LDSG Sbjct: 10 LENQLCFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSG 69 Query: 83 TLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVP 128 TLTP+LKRME GL+ R R EDER VL+SLT G L+EKA +P Sbjct: 70 TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIP 115 >CAC1569 [K] COG1846 Transcriptional regulators Cac Clostridium acetobutylicum Length = 143 Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 60/121 (49%), Positives = 87/121 (71%), Gaps = 3/121 (2%) Query: 19 QALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLF 78 + L L +QLCF++Y++S A+TK YK L L +TYPQYLVM+VLWE+ +T+ +LG +L+ Sbjct: 5 EQLKLKYQLCFSIYASSRAITKVYKPFLNKLGLTYPQYLVMLVLWEEKSITLKDLGNKLY 64 Query: 79 LDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSCMLPSL 138 LDSGTLTPLLKR+E + L+ R R + DER + V++T G L++ A +P SC+L S Sbjct: 65 LDSGTLTPLLKRLEGLNLIVRKRSSLDERLLSVNITEKGEELKKDALEIP---SCVLKST 121 Query: 139 D 139 + Sbjct: 122 N 122