BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0004.p (379 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0741 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 430 e-120 cydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ec... 421 e-117 ZcydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 E... 421 e-117 ECs0769 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 421 e-117 PM0973 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 ... 408 e-113 YPO1118 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 407 e-113 AGl1527 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 400 e-111 VC1843 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 ... 395 e-110 CC0763 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 ... 377 e-104 appB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ec... 376 e-104 >STM0741 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Sty Salmonella typhimurium LT2 Length = 379 Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/379 (55%), Positives = 272/379 (71%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 + DYE L+ IWW VG+L+IGFA+TDGFD GVGM+ F G+NDTERRI+IN+I P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ DPRWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WG+FIG FVPPL+ GVAFGNLL GVPFH D+ +R+ YTG+FF LLNPFGLLAG++SV M+ Sbjct: 121 WGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGLLAGIVSVGMI 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 + GA + ++T + R+R T AALVT++ F G WV + GY + S D ++A Sbjct: 181 ITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL K V AGAW N+ P+ L PALGV +L L + + AF+ S+L++ Sbjct: 241 SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLA 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 IILTAG+++FPFVMPSS +SLT+WD+ SS TL LM W+ +F+P+I++YT W Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYW 360 Query: 361 VVKGKVTARDIHENEHTAY 379 + G++T I N H+ Y Sbjct: 361 KMFGRITKEHIESNTHSLY 379 >cydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Eco Escherichia coli K12 Length = 379 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/379 (54%), Positives = 271/379 (71%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 + DYE L+ IWW VGVL+IGFA+TDGFD GVGM+ F G+NDTERRI+IN+I P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WG+FIG FVPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF LLNPFGLLAG++SV M+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 + GA + ++T + R+R T AALVT++ F G WV + GY + S D +A Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL K V AGAW N+ P+ PALGV +L L A + A AF+ S+L++ Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 IILTAG+++FPFVMPSS +SLT+WD+ SS TL +M W+ ++ +P+I++YT W Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 361 VVKGKVTARDIHENEHTAY 379 + G++T DI N H+ Y Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >ZcydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 EcZ Escherichia coli O157:H7 EDL933 Length = 379 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/379 (54%), Positives = 271/379 (71%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 + DYE L+ IWW VGVL+IGFA+TDGFD GVGM+ F G+NDTERRI+IN+I P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WG+FIG FVPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF LLNPFGLLAG++SV M+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 + GA + ++T + R+R T AALVT++ F G WV + GY + S D +A Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL K V AGAW N+ P+ PALGV +L L A + A AF+ S+L++ Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 IILTAG+++FPFVMPSS +SLT+WD+ SS TL +M W+ ++ +P+I++YT W Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 361 VVKGKVTARDIHENEHTAY 379 + G++T DI N H+ Y Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >ECs0769 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ecs Escherichia coli O157:H7 Length = 379 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/379 (54%), Positives = 271/379 (71%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 + DYE L+ IWW VGVL+IGFA+TDGFD GVGM+ F G+NDTERRI+IN+I P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WG+FIG FVPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF LLNPFGLLAG++SV M+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 + GA + ++T + R+R T AALVT++ F G WV + GY + S D +A Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL K V AGAW N+ P+ PALGV +L L A + A AF+ S+L++ Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 IILTAG+++FPFVMPSS +SLT+WD+ SS TL +M W+ ++ +P+I++YT W Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 361 VVKGKVTARDIHENEHTAY 379 + G++T DI N H+ Y Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >PM0973 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Pmu Pasteurella multocida Length = 378 Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/378 (51%), Positives = 271/378 (71%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 + DYE L+ +WW +GVL+IGFA+TDGFD GV +LPFAGK + E+RI+IN+I P W+GN Sbjct: 1 MIDYEILRFVWWILIGVLLIGFAVTDGFDMGVLTLLPFAGKKEVEKRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W +TAGGA FAAWP+VYAT+FSGFYIA++++L +LFFRPVG +YR+K+ +P WR WD Sbjct: 61 QVWLLTAGGAMFAAWPIVYATSFSGFYIAMILVLAALFFRPVGLEYRAKIDNPTWRTLWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WGLFIGGFVP L+ GVAFGNLL GVPF +++ ++V+YTGSFFALLNPF LL GL+S+AML Sbjct: 121 WGLFIGGFVPSLVFGVAFGNLLQGVPFEFNELLQVKYTGSFFALLNPFALLCGLVSLAML 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSAF 241 G+A+ +KT + + R+R A+ T++ F+ G W+ G+ + S+ D N+ Sbjct: 181 TTQGSAWLQMKTTSELRHRARSITQAGAVATIITFVLAGVWLYFKDGFVVTSVIDHNAPS 240 Query: 242 TPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTG 301 TP KTV + AGAWF+NY P+ +FP L V AVL L + + AF+ S+L++ G Sbjct: 241 TPFGKTVAIEAGAWFNNYKDMPILWIFPLLAVVSAVLNILASKADRSGFAFLFSSLTMAG 300 Query: 302 IILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRV 361 IILTAG+S+FPFVMPS + SL +WDS SS TL LM L+F+ +++ YT W Y Sbjct: 301 IILTAGISMFPFVMPSITHPELSLLMWDSTSSKLTLTLMLGFALVFVVILLAYTIWAYWK 360 Query: 362 VKGKVTARDIHENEHTAY 379 + G++ ++ I EN+++ Y Sbjct: 361 MFGRLDSQFIEENKNSLY 378 >YPO1118 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ype Yersinia pestis Length = 379 Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/379 (52%), Positives = 269/379 (70%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 +FDYE L+ IWW +GVL+IGFA+TDGFD GVG++L GKNDTERRI+IN+I P W+GN Sbjct: 1 MFDYEVLRFIWWLLIGVLLIGFAVTDGFDMGVGILLRIIGKNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFYIA++++L +LFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYIAMILVLAALFFRPVGFDYRSKLENSRWRNMWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WG+FIG FVP ++ GVAFGNLL GVPFH ++ MR+ YTG+FF LLNPFGLLAG++S+ ML Sbjct: 121 WGIFIGSFVPAVVFGVAFGNLLQGVPFHMNEYMRLFYTGNFFQLLNPFGLLAGIVSLTML 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 + GA + ++T + RSRK +ALV + F+ G W+ + + G+ I S+ D + Sbjct: 181 VTQGATYLQMRTRGELHLRSRKAAQISALVMSVAFLLAGIWLVKGIDGFVITSVLDTAAE 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 P+ K V AGAW N+ K+P+ PALGV + LL+ AF+ S+L++ Sbjct: 241 SNPMRKEVAHQAGAWLINFNKYPILWALPALGVILPLFTILLSRFEKGAWAFLFSSLTIA 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 +ILTAG+++FPFVMPSS SLT+WD+ SS TL +M + +IF+P+I++YT W Y Sbjct: 301 CVILTAGVTMFPFVMPSSTMPNVSLTMWDATSSLLTLKVMTIVAIIFVPIILLYTSWCYY 360 Query: 361 VVKGKVTARDIHENEHTAY 379 + G++ I N+H+ Y Sbjct: 361 KMFGRIDKEFIENNKHSLY 379 >AGl1527 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 385 Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust. Identities = 204/382 (53%), Positives = 264/382 (69%), Gaps = 4/382 (1%) Query: 1 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60 + DYE L++IWW +GVL+IGFA+T GFD G G +LPF K D ERR++IN+IGP WEG Sbjct: 5 QLIDYEILRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEG 64 Query: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120 NQ W I GGA FAAWP +YA +FSGFY+A+ LF+L RPVGF YRSK P WR+ W Sbjct: 65 NQVWLILGGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGW 124 Query: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTG-SFFALLNPFGLLAGLLSVA 179 DW LF+GGFVP LI GVA GN+L GVPFH++D +R+ Y G + F LLNP+ LL GL+SV+ Sbjct: 125 DWALFVGGFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVS 184 Query: 180 MLLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGG--FWVAQMPGYRIVSMPDA 237 ML+MHGAA+ +KTE VA R+R AAL T +LF GG W+ + GYR S Sbjct: 185 MLVMHGAAWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLG-VDGYRFTSEVVT 243 Query: 238 NSAFTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASAL 297 + PL+KTVEV G WF NYA P L PALG+ + A +L R LA ++S+L Sbjct: 244 DGPSNPLSKTVEVAGGVWFANYAAHPWMMLAPALGLVFPLFAFILFRARREVLALLSSSL 303 Query: 298 SVTGIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGW 357 ++ GII T G+++FPF++PSS+D +SSLT+WD+ SSH TL M + LIF+P+I+ YT W Sbjct: 304 AIFGIIATVGLTMFPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIFVPMIVAYTSW 363 Query: 358 VYRVVKGKVTARDIHENEHTAY 379 VYRV+ GKV + I ++ AY Sbjct: 364 VYRVLWGKVDEKAIRDDSGHAY 385 >VC1843 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Vch Vibrio cholerae Length = 378 Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/378 (51%), Positives = 261/378 (69%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 +FDYE L+LIWW +GVL++GFA+TDGFD GVG ++P GKND ERR++IN+I P W+GN Sbjct: 1 MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWPLVYAT+FSGFY+A++V L +L+ RPVG DYRSK+ +WRN WD Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 + GF+PP+I GVAFGNLL GVPF D + Y GSFF LLNPF LL GL+S+ M Sbjct: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSAF 241 L+ G+A+ +KT + V +R+R L+T + F+A GFWV + GY IV D N+A Sbjct: 181 LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS 240 Query: 242 TPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTG 301 PL K V AGAW N+ + PV L PALGV +L+ L + + LAF+ S+L G Sbjct: 241 NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAG 300 Query: 302 IILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRV 361 +I TAG ++FPFVMPSSL+ SLT+WD+ SS TL LM + ++ +P+I+ YT W Y Sbjct: 301 VIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYK 360 Query: 362 VKGKVTARDIHENEHTAY 379 + G++ + I +N+++ Y Sbjct: 361 MFGRLDDKFIEDNKNSLY 378 >CC0763 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ccr Caulobacter vibrioides Length = 383 Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/374 (54%), Positives = 257/374 (68%), Gaps = 3/374 (0%) Query: 4 DYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGNQT 63 D+ TL++IWWA VG+L+IGFALTDGFD GVG +LPF K D ERR++IN +G TWEGNQ Sbjct: 6 DFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQV 65 Query: 64 WFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWDWG 123 WFI GGA FAAWP VYA +FSGFY+A+ V+L ++ RPVGF YRSK DPRWR WDW Sbjct: 66 WFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDWA 125 Query: 124 LFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLM 183 LF+GGFVP L GVA GN+L G PF D +R Y GSF L +PF LL GLLSV+ML++ Sbjct: 126 LFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLVL 185 Query: 184 HGAAFAFVK-TEAAVAERSRKTIIGAALVTVLLFIAGGFWVA-QMPGYRIVSMPDANSAF 241 HGAA+ VK E VAER+R+ A L +++LF AGGFWVA G+RI + DA Sbjct: 186 HGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGPS 245 Query: 242 TPLAKTVEVVA-GAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL V GAW DNY + L P LG AGA LA L +SA +AF S+ S Sbjct: 246 NPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASAV 305 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GII T G+S+FPF++PSS+D +SSLT+W++ SSH TL +M + ++FLPL++ YT WVY+ Sbjct: 306 GIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVYK 365 Query: 361 VVKGKVTARDIHEN 374 V+ G+ T + N Sbjct: 366 VLWGRSTTAALAVN 379 >appB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Eco Escherichia coli K12 Length = 378 Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/379 (49%), Positives = 257/379 (67%), Gaps = 2/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 +FDYETL+ IWW +GV+++ F ++DGFD G+G +LP +ND ERRI+IN++G WEGN Sbjct: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W I AGGA FAAWP VYA AFSGFY+A++++L SLFFRP+ FDYR K+AD RWR WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 GL IG VPP++ G+AFGNLLLGVPF + +RVEY GSF+ LL PF LL GLLS+ M+ Sbjct: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWV-AQMPGYRIVSMPDANSA 240 ++ G + +KT + RS+ AAL+ +L F+ G+W+ + G+ +++ DAN Sbjct: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL K V V+ GAW +N+ + PV +FP LG +L + F+ ++L Sbjct: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 G+I TAG++LFPFVMPSS+ SSLTLWDS SS TL +M +VLIFLP++++YT W Y Sbjct: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 Query: 361 VVKGKVTARDIHENEHTAY 379 + G++T + NE+ Y Sbjct: 360 KMWGRMTTETLRRNENELY 378