BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0001.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1241 [K] COG1510 Predicted transcriptional regulators Rso Ral...   243   1e-64
AGl1535 [K] COG1510 Predicted transcriptional regulators Atu Agr...   205   4e-53
BMEII0763 Non COG                                                     201   1e-51

>RSp1241 [K] COG1510 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 186

 Score =  243 bits (621), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 137/170 (80%)

Query: 2   QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61
           QRF+ HFGEMGSRWGINRTVGQIYALLY     +NADEIA+ L FSRSNVS+GLKEL+SW
Sbjct: 8   QRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLKELESW 67

Query: 62  RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121
           +LV+L HKP DRREYF  P DIW IF+ L EERR+REI+PTLS+LRD +LE  G+ DD+ 
Sbjct: 68  KLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPGDPDDRH 127

Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171
            Q RM+EMY LI L ++WFD+VQ+L  + L  LMKMGAKV+KLL+++ K 
Sbjct: 128 AQARMKEMYRLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKL 177


>AGl1535 [K] COG1510 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 214

 Score =  205 bits (521), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 129/177 (72%)

Query: 1   MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS 60
           +Q F+ HFGEMGSRWGINRTVGQ+YALLYI  + L ADEI + L  SRSNVSM LKELQ+
Sbjct: 31  VQSFVLHFGEMGSRWGINRTVGQVYALLYISPQPLCADEIVEALGISRSNVSMSLKELQA 90

Query: 61  WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK 120
           W L  L H P DRR++F  P D+W I + L EER++REI+PTLS+LR+ L+E   N+D++
Sbjct: 91  WNLAILKHFPGDRRDFFTTPDDVWQILRTLAEERKKREIDPTLSVLREILMETPENEDER 150

Query: 121 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFRLGSHP 177
             Q+R+ EM  LIE  + W+D+V+RL  E L SL+ +G+KV KLL+ ++K    + P
Sbjct: 151 HAQRRIDEMKTLIEQLTGWYDDVKRLETERLASLLALGSKVTKLLEAKDKIVSLARP 207


>BMEII0763 Non COG
          Length = 194

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%)

Query: 1   MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS 60
           +Q F+ HFGEMGSRWGINRTVGQIYALLY+    L ADEI + L  SRSNVSMG++ELQ 
Sbjct: 7   VQSFVLHFGEMGSRWGINRTVGQIYALLYLSPEPLCADEIVEALGVSRSNVSMGIRELQG 66

Query: 61  WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK 120
           W LV L H P DRR++F  P D+W I + L EER++REI+PTLS+LR+ L+E   +  D+
Sbjct: 67  WNLVLLKHIPGDRRDFFTTPDDVWQILRTLAEERKKREIDPTLSVLREVLMEQPQDDSDR 126

Query: 121 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171
             Q RM++MY LIE  ++W+D+V++L  + L SL+ +GAKV + L+  ++ 
Sbjct: 127 YAQDRMKDMYSLIERLTNWYDDVKKLDTDRLTSLLALGAKVTRFLETTDRI 177