BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0127.p         (279 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0758 [T] COG1639 Predicted signal transduction protein Pae Pse...    77   4e-14

>PA0758 [T] COG1639 Predicted signal transduction protein Pae Pseudomonas
           aeruginosa
          Length = 278

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 16  RGELVFPANVSASIKLQKALADPDCHLELAAKLVMAEPLVSARTVAIANSAAYNRSGGEI 75
           + ELV P     ++++++A  DPD  ++  +K++  +  ++AR + + NS    RS  EI
Sbjct: 18  QDELVLPTLPEVALQVREAAEDPDVSIQALSKVIGNDAALTARIIRVVNSPLL-RSPKEI 76

Query: 76  NNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWEHCAHVAATAYVLTAK 135
            +++ A+ RLG      + T + + Q+ +   +   R K  ++W     +A   +VL   
Sbjct: 77  TDLQMAISRLGINYTCNLATGLAMEQMFQATTDVVDR-KMREVWNKSTEIAGICHVLARH 135

Query: 136 LTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGT--EDWMEYGEKMIGRAVLKKLG 193
            T+  P+ A  AG+VH++G   +L+  +D   LL         +E    +IG  +LK   
Sbjct: 136 YTRLAPDQATLAGLVHQIGVLPILTYAEDHNELLSDSISLSHVIERIHPLIGERILKAWD 195

Query: 194 VPQPVVD 200
            P P+ +
Sbjct: 196 FPAPIAE 202