BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0121.p (182 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0040 [TK] COG4567 Response regulator consisting of a CheY-lik... 234 6e-62 PA4493 [TK] COG4567 Response regulator consisting of a CheY-like... 177 1e-44 XF2578 [TK] COG4567 Response regulator consisting of a CheY-like... 155 7e-38 mlr5308 [TK] COG4567 Response regulator consisting of a CheY-lik... 147 2e-35 BMEI1811 [TK] COG4567 Response regulator consisting of a CheY-li... 142 5e-34 SMc02584 [TK] COG4567 Response regulator consisting of a CheY-li... 140 1e-33 AGc82 [TK] COG4567 Response regulator consisting of a CheY-like ... 138 6e-33 CC1767 Non COG 133 3e-31 mlr6853 [TK] COG4567 Response regulator consisting of a CheY-lik... 127 9e-30 CC0247 Non COG 107 1e-23 >RSc0040 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Rso Ralstonia solanacearum Length = 192 Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVL+EH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >PA4493 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Pae Pseudomonas aeruginosa Length = 186 Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/179 (53%), Positives = 127/179 (70%), Gaps = 8/179 (4%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQW 64 L++DD+ F LAR+++RRG R + A S E L A+++ DYA +DL++E DSGL Sbjct: 15 LLLVDDDPTFTRVLARAMSRRGLRVSTAGSAEEGLALAQQDTPDYAVLDLKMEGDSGLVL 74 Query: 65 VSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSA-LSHSGDGEQA 123 + L + R+++LTGY+SIAT V+AIK GA NYL KPA+ D +L+A LS D Sbjct: 75 LPKLLELHADMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALLSEHAD---- 130 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPVAR 182 +T +P +P+S++RL+WEHIQRVLAEHEGNIS+TARAL MHRRTLQRKL KRPV R Sbjct: 131 LDTLVP---ENPMSVDRLQWEHIQRVLAEHEGNISATARALGMHRRTLQRKLQKRPVRR 186 >XF2578 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Xfa Xylella fastidiosa 9a5c Length = 192 Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 114/178 (64%), Gaps = 9/178 (5%) Query: 6 LILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQWV 65 L++DD+ ++ TL RSL RRG A +AL AAR +A +DL+L +DSGL + Sbjct: 10 LLVDDDTLYLRTLQRSLGRRGVDTVTATDTVSALTAARSMLPSFALLDLKLGQDSGLALI 69 Query: 66 SPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQAAE 125 LR R+L++TGYASIAT V+AIK GAD YL KPAN+++IL A+S E A Sbjct: 70 QELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAIS-----EDTAN 124 Query: 126 TPLPVEEASPL----SLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRP 179 P ++ S L L RL+WEHIQ+ L E +GNIS+ AR L MHRR+LQRKL KRP Sbjct: 125 GLTPDKDESALHTMTPLSRLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRP 182 >mlr5308 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 187 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 7/175 (4%) Query: 4 AFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQ 63 + LI+DD+ F LAR++ RGF A S E A+ AR YA +D++L +GL Sbjct: 17 SLLIVDDDKPFLTRLARAMETRGFVVETAESVEEAVGKARANPPAYAVVDMRLGDGNGLD 76 Query: 64 WVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQA 123 V+ +R+ +R ++LTGY +IAT V A+K GA +YL+KPA+ D I +AL+ + GE+A Sbjct: 77 VVAAIREKREDSRTIILTGYGNIATAVTAVKLGAVDYLSKPADADDIFAALTRTS-GERA 135 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 A P E +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 136 A----PPE--NPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184 >BMEI1811 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Bme Brucella melitensis Length = 187 Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 7/174 (4%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQW 64 L++DD+ F LAR++ RGF+ T A S E + A + YA +D++L +GL Sbjct: 18 LLLVDDDKPFLQRLARAMESRGFQVTTAESVEEGIAAVKTSAPAYAVVDMRLGDGNGLNI 77 Query: 65 VSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQAA 124 + +R R +VLTGY +IAT V A+K GA +YL+KPA+ D + +AL+ GE+ A Sbjct: 78 IEAIRSRRADTRAIVLTGYGNIATAVNAVKLGAIDYLSKPADADEVFAALTRR-PGEKVA 136 Query: 125 ETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 P E +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 137 ----PPE--NPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184 >SMc02584 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Sme Sinorhizobium meliloti Length = 194 Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/175 (46%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 4 AFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQ 63 + LI+DD+ F LAR++ RGF +A S + A+ +A IDL+L SGL Sbjct: 24 SLLIVDDDTAFLRRLARAMEARGFAVEIAESVAEGIAKAKTRPPKHAVIDLRLSDGSGLD 83 Query: 64 WVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQA 123 + +R R++VLTGY +IAT V A+K GA +YLAKPA+ D IL+AL GE+ Sbjct: 84 VIEAIRGRRDDTRMIVLTGYGNIATAVNAVKLGALDYLAKPADADDILAALIQRP-GER- 141 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 E P +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 142 VEPP-----ENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 191 >AGc82 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 195 Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 7/175 (4%) Query: 4 AFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQ 63 + LI+DD+ F LAR++ RGF A + + ++ YA +DL+L +GL+ Sbjct: 25 SLLIVDDDGPFLRRLARAMETRGFAVDTAETVSEGIARSKAAPPKYAVVDLRLADGNGLE 84 Query: 64 WVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQA 123 + +RQ +++VLTGY +IAT V A+K GA +YLAKPA+ D + +AL+ GE+ Sbjct: 85 VIEAIRQNRDDTQIVVLTGYGNIATAVTAVKLGALDYLAKPADADDVFNALTQRK-GEK- 142 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 E P +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 143 TEVP-----ENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 192 >CC1767 Non COG Length = 177 Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/175 (45%), Positives = 103/175 (58%), Gaps = 8/175 (4%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQW 64 ++++D++ FA TL RS RRG+ E ALE R YA +DL+L +SGL Sbjct: 7 LILIEDDEKFAATLKRSFERRGYEVAHVSGLEQALETLRTFTPRYAVVDLKLAGESGLAC 66 Query: 65 VSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSA-LSHSGDGEQA 123 V L + P ++VLTG+ASIAT V+AIK GA +YLAKP+N D I +A L GD + A Sbjct: 67 VRALAERDPDMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFLKREGDIDAA 126 Query: 124 AETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 S++ LEWE I + L E + NIS TAR L MHRRTL RKL KR Sbjct: 127 I-------GGRATSIKNLEWERIHQTLVETDFNISETARRLGMHRRTLARKLEKR 174 >mlr6853 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 182 Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 102/179 (56%), Gaps = 9/179 (5%) Query: 4 AFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQL-EKDSGL 62 + I++D+ FA TL RS +R + V H E L A YA +DL+L + SGL Sbjct: 10 SLFIVEDDATFAKTLKRSFEKRDYDVVVCHGREDLLGALETAVPAYAVVDLKLGARGSGL 69 Query: 63 QWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQ 122 + V L R++VLTG+ASIAT V+AIK GA +YLAKPAN D I +A Sbjct: 70 ECVKLLSARDTSMRIVVLTGFASIATAVEAIKLGACHYLAKPANTDDIEAAFGR------ 123 Query: 123 AAETPLPVEEAS-PLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 AE + V +S P S++ LEWE I L E NIS TAR L +HRRTL RKL KR V Sbjct: 124 -AEGDVSVSLSSRPTSIKNLEWERIHETLVETGFNISETARRLGLHRRTLARKLEKRVV 181 >CC0247 Non COG Length = 185 Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 100/161 (62%), Gaps = 7/161 (4%) Query: 18 LARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDSGLQWVSPLRQALPHARL 77 L R+L +RGF T+A S AL R + +A +D++LE SGL+ V +R A A++ Sbjct: 29 LGRALEQRGFEVTLAASVAEALTILRTQAPAHAVLDMRLEDGSGLKVVEAVRDARADAKV 88 Query: 78 LVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDGEQAAETPLPVEEASPLS 137 ++LTGY +IAT V A+K+G +YL+KPA+ D + A AA+ P +P+S Sbjct: 89 IMLTGYGNIATAVAAVKAGVVDYLSKPADADDVARA-------LLAAKDAAPAPPENPMS 141 Query: 138 LERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 +R+ WEHIQRV N+S TAR LNMHRRTLQR LAKR Sbjct: 142 ADRVRWEHIQRVYEMCGHNVSETARRLNMHRRTLQRILAKR 182