BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0112.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1781 Non COG                                                        67   8e-12

>RSc1781 Non COG
          Length = 96

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 3  LYIYYRVGTAQAISLFGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYPDIPPAQ 62
          L++Y+R+    A +   + +     ++   G++G L RRP  +DGL TWME Y DIPP  
Sbjct: 5  LFVYFRIAERDAAAALPRWQRWLDTVEEATGVSGVLMRRPEVRDGLATWMECYHDIPP-- 62

Query: 63 ADAFSRTLAQALADCGAADLISGERHVEQF 92
            AF+ TLA      G  + ++GERH E F
Sbjct: 63 --AFAATLAGLWETGGPREFVAGERHAECF 90