BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0111.p         (276 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0339 [S] COG3332 Uncharacterized conserved protein Pae Pseudom...   211   2e-54
RSc1780 Non COG                                                       209   5e-54
BH1727 [S] COG3332 Uncharacterized conserved protein Bha Bacillu...   189   4e-48

>PA0339 [S] COG3332 Uncharacterized conserved protein Pae Pseudomonas
           aeruginosa
          Length = 251

 Score =  211 bits (537), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 162/244 (66%), Gaps = 10/244 (4%)

Query: 1   MCLIIFAWKVIPGMPLIMAANRDEFYARPAVDAGWWKDHPHIYAGRDLQGGGTWLGVTRD 60
           MCLI+FAW+    +PL++AANRDEFYARP++    W+D   ++AGRDL+ GGTWLG+   
Sbjct: 1   MCLIVFAWQPGHALPLLVAANRDEFYARPSLPLAAWEDAEGVFAGRDLEAGGTWLGLGPA 60

Query: 61  GRFAALTNVRAPSERRTDAPTRGQLVADYLAGNLDPQAYLRQIEAQAQQYNGFNLLLGNR 120
           GRFAALTNVR PS+      +RG+LVAD+L G  +P  YL Q+  +A  Y+GFNLL+G+R
Sbjct: 61  GRFAALTNVRDPSQALGKR-SRGELVADFLRGGGNPADYLAQVAGRAADYSGFNLLIGDR 119

Query: 121 DTMLWYSNRGQQDPRNGQP--LDYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAPEET 178
              LW+ N     PR G P  L  G+YG+SNA LDTPWPKL +A+A  A  L +  P+  
Sbjct: 120 H-QLWHYN-----PRVGPPRLLPAGIYGLSNAALDTPWPKLLKARAALAERLAEPHPQAL 173

Query: 179 FFEMLTDATRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSSVVRVPIVGEPVLTEH 238
             E+L DA  A D +LPDTG+GL  ER+LS +FI SP YGTR SSVVRV   G   + E 
Sbjct: 174 -LELLADAAPAADGQLPDTGVGLATERLLSSVFIASPSYGTRASSVVRVHADGTREMIER 232

Query: 239 VVDP 242
              P
Sbjct: 233 SFGP 236


>RSc1780 Non COG
          Length = 272

 Score =  209 bits (532), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/253 (49%), Positives = 154/253 (60%), Gaps = 16/253 (6%)

Query: 1   MCLIIFAWKVIPGMPLIMAANRDEFYARPAVDAGWWKDHPHIYAGRDLQ----GGGTWLG 56
           MCLI+ AW   P   L++AANRDEFY RPA    WW D PH+ AGRDL       GTW+G
Sbjct: 1   MCLILTAWHAHPAYALVVAANRDEFYDRPAAPLAWWSDAPHVLAGRDLAQVVGHAGTWMG 60

Query: 57  VTRDGRFAALTNVRAPSERRTDAPTRGQLVADYLAG-NLDPQAYLRQIEAQAQQYNGFNL 115
           +TRDGRFAALTN RAPSERR DA +RG+LVA++LA  +    AYL Q++A+   YNG+NL
Sbjct: 61  MTRDGRFAALTNYRAPSERRPDARSRGELVANFLAAEDASIPAYLDQLKARNGVYNGYNL 120

Query: 116 LLGNRDTMLWYSNRGQQDPRNGQPLDYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAP 175
           L   RD + W SNR +  PR   P   GVYG+SNALLDTPW K+    A FA  L     
Sbjct: 121 LTATRDELWWTSNRAEA-PRQLAP---GVYGLSNALLDTPWFKVRHRVAAFAEALAADTG 176

Query: 176 EE-------TFFEMLTDATRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSSVVRVP 228
                     + ++L +   A    LP TG+  E E++LS  FIRSP YGTR S+V+R+ 
Sbjct: 177 RHGNAIDVARYLDLLAETREAPLGALPATGVAPEWEKLLSAAFIRSPRYGTRASTVLRIR 236

Query: 229 IVGEPVLTEHVVD 241
             G   +TE   D
Sbjct: 237 HDGCFDVTERRFD 249


>BH1727 [S] COG3332 Uncharacterized conserved protein Bha Bacillus
           halodurans
          Length = 269

 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 149/251 (59%), Gaps = 11/251 (4%)

Query: 1   MCLIIFAWKVIPGMPLIMAANRDEFYARPAVDAGWWKDHPHIYAGRDLQGGGTWLGVTRD 60
           MCL+ FA++     P + AANRDE+Y RP + A  WK+ P++  GRDL+ GGTWLG T++
Sbjct: 1   MCLLTFAYQTNKRFPFVFAANRDEYYDRPTLFAHEWKEDPNVIGGRDLKKGGTWLGFTKE 60

Query: 61  GRFAALTNVRAPSERRTDAP--TRGQLVADYLAGNLDPQAYLRQIEAQAQQYNGFNLLLG 118
           G+ AALTNVR  S + +  P  +RG +V DYL  N   Q ++ ++   A +++G+NL+ G
Sbjct: 61  GKIAALTNVR-DSFKHSGIPFQSRGFIVQDYLTSNTSAQLFMERLIQTADEFDGYNLVFG 119

Query: 119 NRDTMLWYSNRGQQDPRNGQPLDYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAPEET 178
           +   + +Y+NR ++    G+ L  G Y +SN  +++ WPK  + +    S+L +    ET
Sbjct: 120 SYHDLYYYTNRMEK----GEKLKPGYYMLSNGQMNSHWPKAVKVRTHLQSVLEREQDIET 175

Query: 179 FFE----MLTDATRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSSVVRVPIVGEPV 234
             +    ++ D  R  D +LPDTG+G+E ER+LSPIFI    YGTR ++V+     GE  
Sbjct: 176 IIKKLLAIMQDEERFPDEQLPDTGVGIEWERILSPIFINGKTYGTRATTVIICTDEGESF 235

Query: 235 LTEHVVDPMAM 245
             E    PM +
Sbjct: 236 FLEWNYGPMGI 246