BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0054.p         (249 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc1613 [S] COG5446 Predicted integral membrane protein Atu Agro...   193   4e-49
mll1309 Non COG                                                       171   1e-42
PA2946 [S] COG5446 Predicted integral membrane protein Pae Pseud...   167   2e-41
BMEI0692 [S] COG5446 Predicted integral membrane protein Bme Bru...    89   1e-17

>AGc1613 [S] COG5446 Predicted integral membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 241

 Score =  193 bits (490), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 142/246 (57%), Gaps = 15/246 (6%)

Query: 4   TVFRRMASAVVVAGALSGVLLSGVQQFQVEKLILQAEQYEKAAEEGASAAPQAAHEHEHD 63
           + FR +    ++ G L G  +S +Q F    LILQAE +E A E     AP     H HD
Sbjct: 7   SFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGE-----AP-----HSHD 56

Query: 64  QAHEHAAASAHAHEHSHDADAWEPADGAERTGYTVLANVSMAVGFALLLVAAITLSGRQV 123
                AA  AH     H+ +AW PADG ERT YTV ANV  A+G+AL+L   I+L G   
Sbjct: 57  APAPGAAVPAH----EHNDEAWAPADGFERTAYTVAANVLTAIGYALVLTGLISLRGTNT 112

Query: 124 SWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQFWWVMTAVMTAASLGLFVFT 183
            WR GLLWG+AG+    +AP +GLPPE+PG+ AA L+ARQ WW+ T   TA  + L  F 
Sbjct: 113 GWREGLLWGVAGFAAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGGIALIAFR 172

Query: 184 RAWWCKLLAVALLVVPHLVGAP-QPEVHGGVAPEELAHAFIRATALANAVFWLALGGLTG 242
           R  W  LLA+ L+V PH++GAP  PE    +AP  L   FI A  + + VFW  +G L+ 
Sbjct: 173 REPWAVLLALVLIVAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSA 232

Query: 243 FFYRRF 248
           FF +RF
Sbjct: 233 FFLKRF 238


>mll1309 Non COG
          Length = 271

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/253 (39%), Positives = 137/253 (54%), Gaps = 31/253 (12%)

Query: 4   TVFRRMASAVVVAGALSGVLLSGVQQFQVEKLILQAEQYEKAAEEGASAAPQAAHEHEH- 62
            +FR +     +AG ++GV+L+ +Q +    LIL+AE YE+A         +  H H+H 
Sbjct: 2   NLFRNVVFIAAIAGLVAGVVLACMQAYATVPLILKAEVYEQA---------EGGHSHDHA 52

Query: 63  -----------DQAHEHAAASAHAHEHSH----------DADAWEPADGAERTGYTVLAN 101
                        A   A  +A++   +           + + W PADG ER  + V++N
Sbjct: 53  AAPATPTGAASGTAMSSAPPAANSMSAATPAPAVAAAPAEDEGWAPADGFERFAFNVVSN 112

Query: 102 VSMAVGFALLLVAAITLSGRQVSWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQA 161
           V   +GFAL+LVA    +G   +WR G+ WGLAG+ VF +AP LGLPPE+P   AA L  
Sbjct: 113 VVTGIGFALILVAVSEFAGGIGNWRQGVFWGLAGFAVFTLAPGLGLPPELPAMPAADLTQ 172

Query: 162 RQFWWVMTAVMTAASLGLFVFTRAWWCKLLAVALLVVPHLVGAPQPEVHGGVAPEELAHA 221
           RQ WWV T + TA  LGL  F ++    +LAVAL+V PH+VGAPQP+      PE L H 
Sbjct: 173 RQIWWVATVIATAIGLGLIAFRKSLPLAILAVALIVAPHIVGAPQPDSFETPIPEGLHHQ 232

Query: 222 FIRATALANAVFW 234
           F+ A  L N VFW
Sbjct: 233 FVVAVTLTNLVFW 245


>PA2946 [S] COG5446 Predicted integral membrane protein Pae Pseudomonas
           aeruginosa
          Length = 364

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 138/226 (61%), Gaps = 17/226 (7%)

Query: 5   VFRRMASAVVVAGALSGVLLSGVQQFQVEKLILQAEQYEKAAEEGASAAPQAAHEHEHDQ 64
           + +R+A     AG L+ +LL+ +Q   V  LIL+AE YEK+        P AA      Q
Sbjct: 132 MIKRIAQTAGFAGLLAALLLTLLQILWVTPLILEAETYEKSE-------PVAA------Q 178

Query: 65  AHEHAAASAHAHEHSHDADAWEPADGAERTGYTVLANVSMAVGFALLLVAAITLSGRQVS 124
            HEHA   A    H HD +AWEP DG +RT  T   N+ +AVGFAL+L    TL     +
Sbjct: 179 PHEHAPGVA---AHVHDEEAWEPEDGWQRTLSTTGGNLVVAVGFALMLAGLFTLRAPGQT 235

Query: 125 WRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQFWWVMTAVMTAASLGLFVFTR 184
           W+ GLLWGLAGY VF +APSLGLPPE+PGT AA L  RQ+WW+ TA  TA  L L VF  
Sbjct: 236 WQ-GLLWGLAGYAVFCLAPSLGLPPELPGTAAADLVQRQYWWIATAAATAVGLALLVFGG 294

Query: 185 AWWCKLLAVALLVVPHLVGAPQPEVHGGVAPEELAHAFIRATALAN 230
            W  KL+   LL +PHL GAPQPEVH  +APE LA  F+ A+ ++N
Sbjct: 295 NWPLKLVGAVLLALPHLFGAPQPEVHASLAPEALAQRFVVASLVSN 340


>BMEI0692 [S] COG5446 Predicted integral membrane protein Bme Brucella
           melitensis
          Length = 131

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 65/123 (52%)

Query: 126 RSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQFWWVMTAVMTAASLGLFVFTRA 185
           ++G+ WGLAG+      P+LGL PE+P   AA L  RQ WW+ T VM+   + L +    
Sbjct: 2   QNGIFWGLAGFFAVAFLPALGLSPELPAMPAADLAERQLWWIATVVMSGLGIYLLILRHE 61

Query: 186 WWCKLLAVALLVVPHLVGAPQPEVHGGVAPEELAHAFIRATALANAVFWLALGGLTGFFY 245
            W K+L + L+V PHL GAP PE      P  LA  +  A+   N   W  +G   G+F 
Sbjct: 62  LWAKVLGLVLIVAPHLYGAPHPEDISSPVPSLLASQYAVASLATNLFMWAVIGLALGWFI 121

Query: 246 RRF 248
           + +
Sbjct: 122 QHY 124