BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0015.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2984 [S] COG4315 Uncharacterized protein conserved in bacteri...   114   6e-26
PA5359 [S] COG4315 Uncharacterized protein conserved in bacteria...   100   1e-21
AGc2741 [S] COG4315 Uncharacterized protein conserved in bacteri...    94   1e-19
SMc01418 Non COG                                                       75   4e-14
AGc3676 [S] COG4315 Uncharacterized protein conserved in bacteri...    68   5e-12

>RSc2984 [S] COG4315 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 148

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 69/103 (66%), Gaps = 7/103 (6%)

Query: 25  AGVKAMDGILVDAHGMTVYTFDKDTPNNGKSVCNGPCAKLWPPV----APMGSPAAPYST 80
           + VK  +G L DAHGMT+YTFD+DT   GKS CNG CA  WPP+    A  GS    Y+ 
Sbjct: 49  SAVKVTNGSLTDAHGMTLYTFDRDTMA-GKSACNGNCANNWPPLTANDADKGS--GDYTI 105

Query: 81  VTRDDGSAQLAYQGKPLYLYEQDKKPGDRAGDNFKDVWHVVKP 123
           + RDDG  Q AY+GKPLYL+ +DK PGD+ GD F + WH+ KP
Sbjct: 106 IVRDDGKKQWAYRGKPLYLWSKDKMPGDQTGDGFMNAWHIAKP 148


>PA5359 [S] COG4315 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 151

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 4/95 (4%)

Query: 31  DGILVDAHGMTVYTFDKDTPNNGKSVCNGPCAKLWPPVAPMGSPAAP--YSTVTRDDGSA 88
           DG+LVD  GMT+YT+DKD+   G+S C+G CAK WPP+A      A   +S V R+DG+ 
Sbjct: 56  DGVLVDGKGMTLYTYDKDS--EGQSACSGQCAKNWPPLAAAQGAQASGDWSLVAREDGTQ 113

Query: 89  QLAYQGKPLYLYEQDKKPGDRAGDNFKDVWHVVKP 123
           Q AY GKPLY + QDKKPGD+ GD     WHV +P
Sbjct: 114 QWAYYGKPLYTFIQDKKPGDKNGDGKMGAWHVAQP 148


>AGc2741 [S] COG4315 Uncharacterized protein conserved in bacteria Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 129

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 68/124 (54%), Gaps = 9/124 (7%)

Query: 1   MRLLATSLLALACASASVTALAQGAGVKAMDGILVDAHGMTVYTFDKDTPNNGKSVCNGP 60
           M L +T+ LA   A  +V   A   G      IL DA GMT+YTFD D   +  S C   
Sbjct: 12  MALASTAALAEPYAGGAVVEKATAKGT-----ILTDAKGMTLYTFDND--GDASSACYDG 64

Query: 61  CAKLWPPVAPMGSPAAP--YSTVTRDDGSAQLAYQGKPLYLYEQDKKPGDRAGDNFKDVW 118
           CAK WPP+A + +  A   Y  + R DG+ Q ++ GKPLY ++ DKKPGD  GD    VW
Sbjct: 65  CAKKWPPLAALKTDKADGDYKPIARKDGTMQWSHDGKPLYRWQMDKKPGDITGDGVGGVW 124

Query: 119 HVVK 122
           HV K
Sbjct: 125 HVAK 128


>SMc01418 Non COG
          Length = 124

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 33  ILVDAHGMTVYTFDKDTPNNGKSVCNGPCAKLWPPVAPMGSPAAP--YSTVTRDDGSAQL 90
           +L   +GMT+YT+  D    G S C   CAK WPP    G  AA   YS V R DG+ Q 
Sbjct: 34  VLAAENGMTLYTYKDD--QKGVSACYDACAKNWPPFMVEGDAAAEGAYSIVERKDGTKQW 91

Query: 91  AYQGKPLYLYEQDKKPGDRAGDNFKDVWHVVKP 123
           A  G PLY + +D+K GD  GD  K  W V +P
Sbjct: 92  AKDGMPLYFWVKDEKMGDVTGDGVKGEWDVARP 124


>AGc3676 [S] COG4315 Uncharacterized protein conserved in bacteria Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 140

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 33  ILVDAHGMTVYTFDKDTPNNGKSVCNGPCAKLWPPVAPMGSPAAP--YSTVTRDDGSAQL 90
           +L    GMT+YTF  D    G S C   CA  WPP     S  A   YS + R DG  Q 
Sbjct: 50  VLAGEKGMTLYTFKND--KKGVSNCYDKCAVNWPPFFAAASDKAEGAYSLLKRKDGKMQW 107

Query: 91  AYQGKPLYLYEQDKKPGDRAGDNFKDVWHVVKP 123
           A  G PLY + +D K GD  GD    VW   KP
Sbjct: 108 AKDGMPLYYWVKDTKKGDATGDGMNGVWDAAKP 140