BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0012.p (797 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 282 3e-75 CC0896 Non COG 231 8e-60 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 230 9e-60 PA0285_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 223 1e-57 PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 222 3e-57 PA4367_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 219 2e-56 BMEI1453_3 [T] COG2200 FOG Bme Brucella melitensis 213 2e-54 PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa 213 2e-54 mll7513_3 [T] COG2200 FOG Mlo Mesorhizobium loti 212 3e-54 sll0267_6 [T] COG2200 FOG Syn Synechocystis 212 3e-54 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 282 bits (721), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 169/424 (39%), Positives = 253/424 (59%), Gaps = 10/424 (2%) Query: 352 ELKISRLAYQDQLTGLPNRVQFADLLRDAIAEAARTPGAACYILMMDLDRFQQVNDVLGH 411 E +I +LA+ D LTGL NR F + L +A P A +L +DLD F+ VND GH Sbjct: 335 ENRIRQLAHYDTLTGLANRTNFREQLDARLA----APEARLGLLYIDLDGFKLVNDTKGH 390 Query: 412 SFGDDLLRQVALRLSAQLLHPGAKLSRLGGDEFAILLPGVDQEGAVEQALQILRALEQPL 471 GD LL +VA RL A PG ++RLGGDEFA+L+P D + A A ++ AL P Sbjct: 391 RAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATALIEALGAPY 450 Query: 472 SL-HQQTVDLGAGIGISGYPAHGQSSDVLLSHAEVAMYIAKRKGSGLV-IYDPAIDQSSQ 529 +L Q V +GA IGI+ PAHG+ ++ LL+ A++A+Y AK G GL ++ ++ Q Sbjct: 451 ALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADMETRIQ 510 Query: 530 ESLSLLSELRRALE-RDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFA 588 L ++LR ALE +D ++ QP +++ +G+V EALVRW H E+G++ PD F+P A Sbjct: 511 ARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVPPDEFVPIA 570 Query: 589 ETTGFIRMLTLWMMEQVARLSEQLQQQGVQLKFSVNLSTRDLLDQELPTAFAAILQRHRL 648 E +G I L +++ + R + + + + +VN+S L L A L L Sbjct: 571 EQSGLIDQLGRFVLHRACREATRWEDGA---RVAVNVSPMQLGKATLAQTVHAALIDSGL 627 Query: 649 QPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKI 708 P L +E+TE+A++ + A + L +L +MG +++DDFGTGYSSLA+L+ P D++KI Sbjct: 628 APDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKIKI 687 Query: 709 DKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMG 768 D+SFV + + D A +VR+ DLG LG+ VAEGVE++ +R+ GC + QGY+ G Sbjct: 688 DRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYYYG 747 Query: 769 KPMP 772 +P P Sbjct: 748 RPAP 751 >CC0896 Non COG Length = 677 Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 151/423 (35%), Positives = 231/423 (54%), Gaps = 13/423 (3%) Query: 357 RLAYQDQLTGLPNRVQ-FADLLRDAIAEAARTPGAACYILMMDLDRFQQVNDVLGHSFGD 415 RLA D LT LPNR + FA+L DA EAAR G ++DLD F+ +ND GH+ GD Sbjct: 227 RLANLDSLTDLPNRRRYFAEL--DARVEAARQSGRGFVAGVIDLDDFKPINDAFGHATGD 284 Query: 416 DLLRQVALRLSAQLLHPGAKL--SRLGGDEFAILLPGVDQEGAVEQ-ALQILRALEQPLS 472 LL +V RL A GA + +RLGGDEF +++ + A+ ++ +L+ Sbjct: 285 RLLIEVGRRLKA---FDGAPILAARLGGDEFGLIIDAALEPDALRVLGRELCASLQATYD 341 Query: 473 LHQQTVDLGAGIGISGYPAHGQSSDVLLSHAEVAMYIAKRKGSGL-VIYDPAIDQSSQES 531 L +GA IG +P+ +S+ L A+ A+Y AK+ G G V++D + + ++ Sbjct: 342 LRGVRAQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDERHEAAIRDM 401 Query: 532 LSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAETT 591 + LR A E ++ QP +++ S + + EAL RW PE G I PD FI AE + Sbjct: 402 AVVEQALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVFIGAAERS 461 Query: 592 GFIRMLTLWMMEQVARLSEQLQQQGVQLKFSVNLSTRDLLDQELPTAFAAILQRHRLQPA 651 G I +T + VA+ +++ + ++ S+NLS RD+ E AI+ + P Sbjct: 462 GQIVEITRLL---VAKALREMRAWPMDVRVSINLSARDIASMENVRRLLAIVSESCIAPH 518 Query: 652 ALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKIDKS 711 + EITE+AI+ D +A++ L +G ++DDFGTG+SSL++L+ LP+D+LKID S Sbjct: 519 RIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPLDKLKIDAS 578 Query: 712 FVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPM 771 FV + + IVR+ + LG NL + V EGVE+E + +G QGY +PM Sbjct: 579 FVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHFARPM 638 Query: 772 PVQ 774 P + Sbjct: 639 PAE 641 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 230 bits (587), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 120/261 (45%), Positives = 157/261 (60%), Gaps = 1/261 (0%) Query: 518 VIYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKG 577 ++ +++ + + L L+ +LR ALER E +L+ QPK G VVG EALVRW HPE+G Sbjct: 2 CFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG 61 Query: 578 FIGPDNFIPFAETTGFIRMLTLWMMEQVARLSEQLQQQG-VQLKFSVNLSTRDLLDQELP 636 + PD FIP AE TG I L W++++ R Q +++G Q +VNLS L Sbjct: 62 LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALV 121 Query: 637 TAFAAILQRHRLQPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLA 696 L RH L+P L LEITES M D + + L++L MG +SIDDFGTGYSSL Sbjct: 122 DTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLL 181 Query: 697 YLKRLPVDELKIDKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQ 756 YLKRLP ELKID+ FV +A D +DA IV + V LG L LR+VAEGVE+E L + Sbjct: 182 YLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTR 241 Query: 757 MGCDQGQGYFMGKPMPVQHFL 777 +GC QG +G+PM Q L Sbjct: 242 LGCHALQGNLLGRPMTAQAVL 262 >PA0285_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 274 Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 163/257 (63%), Gaps = 1/257 (0%) Query: 519 IYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGF 578 Y + ++ + + S LR ALE DE ++ QP +L SG++VG E+LVRW HPE+G Sbjct: 4 FYTRVLTARARAHVQVESALRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGL 63 Query: 579 IGPDNFIPFAETTGFIRMLTLWMMEQVARLSEQLQQQGVQLKF-SVNLSTRDLLDQELPT 637 + P F+P AE G I L W++++ R + QQ+GV+L+F +VN+S+R L Sbjct: 64 VPPGEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELEFVAVNVSSRLFNRGGLEE 123 Query: 638 AFAAILQRHRLQPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAY 697 A L+ L+P L LE+TESA+M+D ++ N L RL +G L+IDDFGTGYSSL Sbjct: 124 RIANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMR 183 Query: 698 LKRLPVDELKIDKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQM 757 LKRLPV +LKID+ FV + DDA I R+ V L ++GLRVVAEG+E ++ LR+ Sbjct: 184 LKRLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREH 243 Query: 758 GCDQGQGYFMGKPMPVQ 774 GCD GQGY+ G+P P + Sbjct: 244 GCDFGQGYWYGRPQPAE 260 >PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 254 Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 156/251 (62%), Gaps = 1/251 (0%) Query: 529 QESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFA 588 QE L LL +LR+ALER + +L+ QPK+ +G ++G EAL+RW HP+ G I P F+P A Sbjct: 1 QEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQFLPLA 60 Query: 589 ETTGFIRMLTLWMMEQVAR-LSEQLQQQGVQLKFSVNLSTRDLLDQELPTAFAAILQRHR 647 E TG I + W++++ R + L +VNLS L + L RH Sbjct: 61 EKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHAGLVDSVRNALLRHS 120 Query: 648 LQPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELK 707 L+P+ L LE+TES M D + LE+LS MG +SIDDFGTGYSSL YLKRLP ELK Sbjct: 121 LEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELK 180 Query: 708 IDKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFM 767 ID+ F+ ++A D DDA IV + V LG L L++VAEGVE+E L ++GC+ QG+ + Sbjct: 181 IDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSLQGFLL 240 Query: 768 GKPMPVQHFLA 778 G+PMP + LA Sbjct: 241 GRPMPAEQLLA 251 >PA4367_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 267 Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/252 (45%), Positives = 160/252 (63%), Gaps = 1/252 (0%) Query: 534 LLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAETTGF 593 L +LR AL+R E L QP+++ +VVG EAL+RW HP GF+ PD FIP AE G Sbjct: 5 LEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIPLAEQNGS 64 Query: 594 IRMLTLWMMEQVARLSEQLQQQGVQ-LKFSVNLSTRDLLDQELPTAFAAILQRHRLQPAA 652 I + W+++Q R + QG L+ +VNLST L LP + +LQ +RL + Sbjct: 65 IFSIGEWVLDQACRQLREWHDQGFDDLRMAVNLSTVQLHHNALPRVVSNLLQVYRLPARS 124 Query: 653 LCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKIDKSF 712 L LE+TE+ +M+D + A L L G ++IDDFGTGYSSL+YLK LP+D++KIDKSF Sbjct: 125 LELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSF 184 Query: 713 VMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPMP 772 V + QD+DDA IVR+ + LG +LG++V+AEGVE+ E + GC++GQGY KP+P Sbjct: 185 VQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCNEGQGYLYSKPLP 244 Query: 773 VQHFLAWREQWR 784 + + +Q R Sbjct: 245 ARELTQYLKQAR 256 >BMEI1453_3 [T] COG2200 FOG Bme Brucella melitensis Length = 259 Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 119/243 (48%), Positives = 153/243 (62%), Gaps = 4/243 (1%) Query: 530 ESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAE 589 + L L S+LRRALERDE L QP ++L G V G EAL+RW HP +G I P FIP AE Sbjct: 1 DKLQLESDLRRALERDEISLVYQPIVKLEEGTVAGFEALMRWEHPRRGAISPSEFIPIAE 60 Query: 590 TTGFIRMLTLWMMEQVAR--LSEQLQQQGVQLKFSVNLSTRDLLDQELPTAFAAILQRHR 647 +G I L L+ M++ A + Q Q + L SVNLS+ L+ Q+L ++L R Sbjct: 61 NSGLIVQLGLFAMQRAAEDLFAWQEQFPKLDLFVSVNLSSTQLIRQDLINDVRSVLSRIH 120 Query: 648 LQPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELK 707 L P +L LE+TES +M++P ++ L RL MG LS+DDFGTGYSSLAYL R P D +K Sbjct: 121 LNPGSLKLELTESVLMENPEQSAYVLARLKAMGIGLSLDDFGTGYSSLAYLTRFPFDIIK 180 Query: 708 IDKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFM 767 ID+SFV K Q Q ++RS V + H+LGL VV EGVESE LRQMGC+ Q + Sbjct: 181 IDRSFV-KGDQPQ-KTTLLRSVVSMAHDLGLAVVTEGVESETDALQLRQMGCEYVQSFMF 238 Query: 768 GKP 770 G+P Sbjct: 239 GQP 241 >PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 267 Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 118/248 (47%), Positives = 153/248 (61%), Gaps = 1/248 (0%) Query: 530 ESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAE 589 E ++L +ELRRALERDE LY QPKL L SG +VGAEALVRW HP G I P+ FIP AE Sbjct: 1 ERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISPERFIPLAE 60 Query: 590 TTGFIRMLTLWMMEQVARLSEQLQQQGVQL-KFSVNLSTRDLLDQELPTAFAAILQRHRL 648 G I L W++E + + Q+ SVNL+ L +L +L++ L Sbjct: 61 DCGLILPLGDWVLEHACQQMGEWQKLHAPFGPLSVNLAGAQLGQPQLIERLEQLLEQSGL 120 Query: 649 QPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKI 708 +P+ L LEITES IM+ A L L +G L+IDDFGTGYSSL+YLKRLP+D LKI Sbjct: 121 EPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDILKI 180 Query: 709 DKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMG 768 DKSF+ + D DA I R+ + LG ++ L V+AEGVE+E L GC+Q QG+ + Sbjct: 181 DKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLS 240 Query: 769 KPMPVQHF 776 P+P + F Sbjct: 241 PPLPAELF 248 >mll7513_3 [T] COG2200 FOG Mlo Mesorhizobium loti Length = 260 Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 156/257 (60%), Gaps = 5/257 (1%) Query: 530 ESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAE 589 + L S+LRRA+ER EF L QP + L G V G EAL+RW HP +G I P +FIP AE Sbjct: 1 DRLQFESDLRRAIERREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAE 60 Query: 590 TTGFIRMLTLWMMEQVARLSEQLQQQ--GVQLKFSVNLSTRDLLDQELPTAFAAILQRHR 647 + G I L L+ M+Q A Q+Q L SVNLS+R L+ ++L + +++ R Sbjct: 61 SCGLIVQLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARAN 120 Query: 648 LQPAALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELK 707 L+P LE+TES +MD+P + + L +L +G LS+DDFGTGYSSLAYL R P D +K Sbjct: 121 LKPRCFRLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIK 180 Query: 708 IDKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFM 767 IDKSFV + A +++S V++ H LGL VVAEG+ E LRQMGC+ Q + Sbjct: 181 IDKSFVDDNTPKR--AVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMF 238 Query: 768 GKPMPVQHFL-AWREQW 783 G PMP L +EQ+ Sbjct: 239 GAPMPGDQVLKTLKEQY 255 >sll0267_6 [T] COG2200 FOG Syn Synechocystis Length = 253 Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 106/245 (43%), Positives = 156/245 (63%), Gaps = 1/245 (0%) Query: 532 LSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAETT 591 +L ++LR ALE+ +F +YLQP+++ G +GAEAL+RW HP +GFI P+ FIP AE Sbjct: 3 FALEADLRSALEQKQFQVYLQPQVD-SHGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEI 61 Query: 592 GFIRMLTLWMMEQVARLSEQLQQQGVQLKFSVNLSTRDLLDQELPTAFAAILQRHRLQPA 651 G I + +++EQV + +LQQ G+ L+ ++N+S R +L + P Sbjct: 62 GLIGGIGDFVLEQVCQYLARLQQLGLTLRIAINVSPRQFRQANFAKEIKNLLACTGVDPY 121 Query: 652 ALCLEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKIDKS 711 L LE+TE I++D +A T+ L +G S+DDFGTGYSSL+YLKRLP++ELKID++ Sbjct: 122 RLTLEVTEGLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKIDRA 181 Query: 712 FVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPM 771 FV QD ++A +V + + + L +VAEGVE+EE L Q+GC+ QGYF G+PM Sbjct: 182 FVQDAPQDLNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYFYGRPM 241 Query: 772 PVQHF 776 P+ F Sbjct: 242 PIDEF 246