BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0187.p
         (478 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311311|ref|YP_003775403.1| cholera toxin secretion EpsM pr...   951   0.0  

>gi|300311311|ref|YP_003775403.1| cholera toxin secretion EpsM
           protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60
           MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK
Sbjct: 1   MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60

Query: 61  LLLLLIFLFRASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWL 120
           LLLLLIFLFRASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWL
Sbjct: 61  LLLLLIFLFRASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWL 120

Query: 121 VLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVP 180
           VLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVP
Sbjct: 121 VLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVP 180

Query: 181 ALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFA 240
           ALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFA
Sbjct: 181 ALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFA 240

Query: 241 LMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV 300
           LMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV
Sbjct: 241 LMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV 300

Query: 301 MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT 360
           MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT
Sbjct: 301 MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT 360

Query: 361 KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA 420
           KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA
Sbjct: 361 KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA 420

Query: 421 SDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEPSN 478
           SDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEPSN
Sbjct: 421 SDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEPSN 478


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,251,766
Number of extensions: 45831
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 478
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,198,455
Effective search space: 466198995
Effective search space used: 466198995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)