BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0180.p (470 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in... 908 0.0 gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis su... 139 4e-34 gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspi... 119 7e-28 >gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in lipopolysaccharide synthesis protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/441 (100%), Positives = 441/441 (100%) Query: 30 MIVAYLWVLVRLHGVPFSGDYWMLAIMAFFISSYFFTEFHERRLRRNPKGTRPVASIFVD 89 MIVAYLWVLVRLHGVPFSGDYWMLAIMAFFISSYFFTEFHERRLRRNPKGTRPVASIFVD Sbjct: 1 MIVAYLWVLVRLHGVPFSGDYWMLAIMAFFISSYFFTEFHERRLRRNPKGTRPVASIFVD 60 Query: 90 WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGLLVSQYAQSRVMRDLHTKGEVSKA 149 WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGLLVSQYAQSRVMRDLHTKGEVSKA Sbjct: 61 WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGLLVSQYAQSRVMRDLHTKGEVSKA 120 Query: 150 IIIGVNPAALKLAERMDNYPALMIKLMGFFDDREIGRQPQGTFTPLMGKMSDVAAYVRKH 209 IIIGVNPAALKLAERMDNYPALMIKLMGFFDDREIGRQPQGTFTPLMGKMSDVAAYVRKH Sbjct: 121 IIIGVNPAALKLAERMDNYPALMIKLMGFFDDREIGRQPQGTFTPLMGKMSDVAAYVRKH 180 Query: 210 NINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMAICE 269 NINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMAICE Sbjct: 181 NINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMAICE 240 Query: 270 TPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIV 329 TPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIV Sbjct: 241 TPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIV 300 Query: 330 VYKFRSMTVLEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPH 389 VYKFRSMTVLEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPH Sbjct: 301 VYKFRSMTVLEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPH 360 Query: 390 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL 449 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL Sbjct: 361 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL 420 Query: 450 TFDLWIIVQTVRLVLKRENAY 470 TFDLWIIVQTVRLVLKRENAY Sbjct: 421 TFDLWIIVQTVRLVLKRENAY 441 >gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis sugar transferase [Herbaspirillum seropedicae SmR1] Length = 461 Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 3/191 (1%) Query: 275 MNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIVVYKFR 334 + F KR D++ + ++L +L P+++ AIC+ GPV+++Q R G + E +V KFR Sbjct: 268 LRTFFKRSFDLITSCIMLPLLSPLMLGAAICIWLEDRGPVLYRQERVGKNNEHFMVLKFR 327 Query: 335 SMTV-LEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPHAVAH 393 SM V E Q A+ GD R+T++G +RK +DELPQ NVL+G MS VGPRP Sbjct: 328 SMRVDAEKAGTPQWASSGDPRITRVGNVMRKYRIDELPQLFNVLRGDMSFVGPRPERPYF 387 Query: 394 NELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLTFDL 453 E + ++I Y +RH VKPGITGWAQV G ++ D ++++DL Y++ SL D+ Sbjct: 388 VEQFAREITFYNVRHCVKPGITGWAQVRYKYGASK--DDAVQKLQYDLYYVKNNSLFLDV 445 Query: 454 WIIVQTVRLVL 464 I++ T+ +V+ Sbjct: 446 LILIDTLSVVI 456 >gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspirillum seropedicae SmR1] Length = 186 Score = 119 bits (297), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 103/190 (54%), Gaps = 7/190 (3%) Query: 279 VKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIVVYKFRSMTV 338 +KR+ D +A V ++L +V++ + V+ TSPGP ++ R G + KFRSM + Sbjct: 1 MKRLFDFAVALVASVLLAIPIVMVMLAVRLTSPGPALYWSERVGRHNRIFKMPKFRSMRI 60 Query: 339 LEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPHAVAHNELYR 398 LT IG FLRKSSLDELPQ ++L+G MS+VGPRP ++L Sbjct: 61 DTPAVATHLLEDPAQWLTPIGSFLRKSSLDELPQLWSILRGDMSLVGPRPALFNQDDLI- 119 Query: 399 KQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLTFDLWIIVQ 458 ++ H++ PG+TGWAQ+NG R E DK + D EYL+R S FDL I+ Sbjct: 120 -TLRTSQGVHELVPGLTGWAQING-RDELPIPDK----VRLDAEYLQRRSFLFDLKILWM 173 Query: 459 TVRLVLKREN 468 T VL R Sbjct: 174 TALKVLARHG 183 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,392,651 Number of extensions: 55780 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 3 Length of query: 470 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 381 Effective length of database: 1,198,455 Effective search space: 456611355 Effective search space used: 456611355 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)