BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0179.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein [Herba...   790   0.0  

>gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/388 (100%), Positives = 388/388 (100%)

Query: 1   MAAQQARADDDGQVVTPYVQYSILYDDNLLRLRDPAQAQATLGTTQMSDTVQSKAGGVRF 60
           MAAQQARADDDGQVVTPYVQYSILYDDNLLRLRDPAQAQATLGTTQMSDTVQSKAGGVRF
Sbjct: 24  MAAQQARADDDGQVVTPYVQYSILYDDNLLRLRDPAQAQATLGTTQMSDTVQSKAGGVRF 83

Query: 61  DRMFSRQHIRLDARLTQNTFDNFRQFDNDQRDLNAYWGWVLGEHLSGDIGYVYSQGLTPF 120
           DRMFSRQHIRLDARLTQNTFDNFRQFDNDQRDLNAYWGWVLGEHLSGDIGYVYSQGLTPF
Sbjct: 84  DRMFSRQHIRLDARLTQNTFDNFRQFDNDQRDLNAYWGWVLGEHLSGDIGYVYSQGLTPF 143

Query: 121 QNLRVLEKNIRTAQTRYATAAWQLHPDWTVRGQYSRFSLGYDLPSLQNNSFSQDIYEMGL 180
           QNLRVLEKNIRTAQTRYATAAWQLHPDWTVRGQYSRFSLGYDLPSLQNNSFSQDIYEMGL
Sbjct: 144 QNLRVLEKNIRTAQTRYATAAWQLHPDWTVRGQYSRFSLGYDLPSLQNNSFSQDIYEMGL 203

Query: 181 DYTARSGSIAGLQVRHTRGNYPEPALVSGALINNSFSQDELKARVSWLYSDKTKLQFLGG 240
           DYTARSGSIAGLQVRHTRGNYPEPALVSGALINNSFSQDELKARVSWLYSDKTKLQFLGG
Sbjct: 204 DYTARSGSIAGLQVRHTRGNYPEPALVSGALINNSFSQDELKARVSWLYSDKTKLQFLGG 263

Query: 241 YVRRERDTGGAANFSGLNARLIADWDATAKTAFTMNLYREIGGVSDIDANYALTNGLSLS 300
           YVRRERDTGGAANFSGLNARLIADWDATAKTAFTMNLYREIGGVSDIDANYALTNGLSLS
Sbjct: 264 YVRRERDTGGAANFSGLNARLIADWDATAKTAFTMNLYREIGGVSDIDANYALTNGLSLS 323

Query: 301 TRWRATEKIRVDAGIDYQRRDYNGAAVVTGVTPSGRKDTYKKYSFGVIYAPLRSLSLMAA 360
           TRWRATEKIRVDAGIDYQRRDYNGAAVVTGVTPSGRKDTYKKYSFGVIYAPLRSLSLMAA
Sbjct: 324 TRWRATEKIRVDAGIDYQRRDYNGAAVVTGVTPSGRKDTYKKYSFGVIYAPLRSLSLMAA 383

Query: 361 IYREDSSSNISGFGYVSNGIALTTRYEF 388
           IYREDSSSNISGFGYVSNGIALTTRYEF
Sbjct: 384 IYREDSSSNISGFGYVSNGIALTTRYEF 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,186,581
Number of extensions: 50022
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)