BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0158.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...   344   2e-96
gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine ...    60   8e-11

>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  344 bits (883), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MSQSHLSAVSSHHGQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFE 60
           MSQSHLSAVSSHHGQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFE
Sbjct: 1   MSQSHLSAVSSHHGQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFE 60

Query: 61  IPLHAKVLAKTGRYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTP 120
           IPLHAKVLAKTGRYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTP
Sbjct: 61  IPLHAKVLAKTGRYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTP 120

Query: 121 HHFHSHSEHHDYFHQHFLVKGREAAQACATTVAKLAQVRAGAQASLNAA 169
           HHFHSHSEHHDYFHQHFLVKGREAAQACATTVAKLAQVRAGAQASLNAA
Sbjct: 121 HHFHSHSEHHDYFHQHFLVKGREAAQACATTVAKLAQVRAGAQASLNAA 169


>gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 60.1 bits (144), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 16  RIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFEIPLHAKVLAKTGRYA 75
           RI  +QA +++D+      A   E+  LG     I    +PGA EIPL  + +A+T ++ 
Sbjct: 16  RIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQKMAETEQFD 75

Query: 76  GIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTPHHFHSHSEHHDYFHQ 135
            ++A G V+ G  Y  + V+    + + ++ LD  VP+ +AVLT       +E+ +    
Sbjct: 76  ALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLT-------TENDEQAEV 128

Query: 136 HFLVKGREAAQACATTVAKLAQV 158
               KG +AA+  A  +A LA V
Sbjct: 129 RMAEKGADAAR-VAVEMANLAIV 150


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 418,977
Number of extensions: 14915
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)