BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0152.p (464 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 932 0.0 gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio... 114 2e-26 gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ... 92 1e-19 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 80 5e-16 gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite s... 71 2e-13 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/464 (99%), Positives = 463/464 (99%) Query: 1 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA Sbjct: 1 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 Query: 61 QHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMW 120 QHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMW Sbjct: 61 QHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMW 120 Query: 121 NWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYL 180 NWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYL Sbjct: 121 NWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYL 180 Query: 181 DDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQ Sbjct: 181 DDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATGRSGFEKTATQI 300 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAAT R+GFEKTATQI Sbjct: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAGFEKTATQI 300 Query: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQADDGATLP 360 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQADDGATLP Sbjct: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQADDGATLP 360 Query: 361 DVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLGQVDDHSRH 420 DVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLGQVDDHSRH Sbjct: 361 DVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLGQVDDHSRH 420 Query: 421 GIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASLPSLIPA 464 GIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASLPSLIPA Sbjct: 421 GIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASLPSLIPA 464 >gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 131/242 (54%), Gaps = 22/242 (9%) Query: 218 LAGLLLNLSEHRVADAKL-----RQ--LAQRVVRSQEEERARLSRDLHDGISQWLVSIKL 270 +AGL ++++E + L RQ L+ RV+ QE ER L+R LHD + Q L ++K+ Sbjct: 233 VAGLAIDVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKI 292 Query: 271 QIEAALVRLNGTPEQAATGRSGFEKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEH 330 +E ++ G+ E + + + VLA+VR +S DLRP LD+LGL AAL Sbjct: 293 NLET--IKKMGSLEGPS-----LQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRS 345 Query: 331 LCGEWRDAAGAGVEIVFENQAQADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVR 390 + + A V FE+ D D+ NT FRI QEA+TNI RHA I V+ Sbjct: 346 YVEQ--KSKLANVNGWFESSGH--DEQLHHDIENTA-FRIVQEAVTNILRHARCQNIWVK 400 Query: 391 LYQGHNLLMLQVQDNGHGFDLGQVDDHSRHG--IGLRNMRERIEAVGGELGIDSSP-AGT 447 + + H+ + L ++D+G GFD+ + ++ G GL NM ER VGG + I S+P AGT Sbjct: 401 IDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGT 460 Query: 448 SI 449 I Sbjct: 461 EI 462 >gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 677 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 12/232 (5%) Query: 233 AKLRQLAQRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATGRSG 292 A LR+L + +EEE+ ++R+LHD + L ++ + +E L P++ R Sbjct: 456 ALLRELTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQIL--PPDEKWADRK- 512 Query: 293 FEKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQ 352 + + ++A RRI +LRP LD GL AA+ E + G + + Sbjct: 513 -VRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIAC-----HASL 566 Query: 353 ADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLG 412 D+ + + ++R+ QE L N+ +HA AS++ V L + + L V+D+G G Sbjct: 567 PDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEE 626 Query: 413 QVDDHSRHGIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASLPSLIPA 464 + D+H + GLR +RER GGE+ I S+P G I+ P L+P+ Sbjct: 627 RRDNHKTY--GLRGLRERATFFGGEVDIRSTP-GKGALITISLPIRPELVPS 675 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 19/183 (10%) Query: 13 VPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLAQHALAHLYDTGR 72 +PL L+ A+ + + AV V L + +L ++ Q AL+ + G Sbjct: 12 LPLVLSLIALLAISIFSAV--------MVRNIRLEERKADL---TNIGQTALSLVKGYGA 60 Query: 73 TDDA---IKEEARHL----LADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMWNWRDA 125 D+ KE+A+ L + L +G DGYF + +MHP + EL G ++ N++D Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 126 SGSFTIQHLIER-ARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYLDDVE 184 +G+ + + ++ GG+ YLW K + PK +VI+ W W + TG Y+DD+ Sbjct: 121 AGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 Query: 185 AAL 187 AA Sbjct: 181 AAF 183 >gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 650 Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 27/228 (11%) Query: 240 QRVVRSQEE-----ERARLSRDLHDGISQWLVSIKLQIEA-----ALVRLNGTPEQAATG 289 QR++ ++E ER L++ LHD I+Q L + LQ++ A RL+ + A Sbjct: 432 QRLIAREKEFAIANERNLLAQGLHDSIAQGLNFLNLQVQMLEDSLARDRLDEIRDIAPLL 491 Query: 290 RSGFEKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFEN 349 R+G ++ + +L R L D L + + + + +G +I Sbjct: 492 RTGVQENYEDVRELLLNFR--------TRLQDSNLDSEMRKALDKLQRQSGLQGQITL-- 541 Query: 350 QAQADDGATL-PDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHG 408 DG L P+ VLF I QEAL+NI +HA A ++++ + + M V D+GHG Sbjct: 542 ---TGDGPPLAPEQQLQVLF-ILQEALSNIRKHARAQQVQISVDNRQDFRM-TVSDDGHG 596 Query: 409 FDLGQVDDHSRHGIGLRNMRERIEAVGGELGIDSSPA-GTSISAVIAR 455 F L +GLR M+ER E +G L IDS P GT I+ + R Sbjct: 597 FTLESARAKGLEHVGLRIMQERAERLGANLEIDSQPGHGTRIALTLLR 644 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,331,421 Number of extensions: 52281 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 8 Length of query: 464 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 375 Effective length of database: 1,198,455 Effective search space: 449420625 Effective search space used: 449420625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)