BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0151.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 432 e-122 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 152 2e-38 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 140 8e-35 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 123 1e-29 gi|300312077|ref|YP_003776169.1| response regulator containing a... 110 7e-26 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 432 bits (1111), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/217 (99%), Positives = 216/217 (99%) Query: 1 MTAAPARAPATTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDL 60 MTAAPARAPA TRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDL Sbjct: 1 MTAAPARAPAATRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDL 60 Query: 61 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD 120 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD Sbjct: 61 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD 120 Query: 121 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS 180 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS Sbjct: 121 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS 180 Query: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP 217 VRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP Sbjct: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP 217 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 126/207 (60%), Gaps = 8/207 (3%) Query: 12 TRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGIN 71 TRIML DDH LVR G++A L +PG+EVV EA E + + DL L+DI M+G+N Sbjct: 3 TRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMN 62 Query: 72 GIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSG 131 G+E +P I L+LSM+ EYVMQ++ AGA GY+ KD+ + ++ A+ V+ G Sbjct: 63 GLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHG 122 Query: 132 GIYYSAALARQ--------LTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRT 183 Y + ++R+ + Q P E+LT R+RE+L IA G + K+IA +L++S +T Sbjct: 123 RQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 Query: 184 VETHRLNIKRKLNIDGQAELIKFAVES 210 +ETHR + +L+I L+++A+ + Sbjct: 183 IETHRAQLMERLDIRDVPGLVRYAIRT 209 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 140 bits (353), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 12 TRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGIN 71 T+I+++DDH +VR G+ + +P +E+ EA A+EA+ Q+ D+ L+DI M + Sbjct: 2 TKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKS 61 Query: 72 GIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSG 131 G+E+ PE+ VL+LSMH ++ Y +Q +++GA GYV K+A + ++V+AI T+ G Sbjct: 62 GVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRG 121 Query: 132 GIYYSAALARQLT-QPL----PPRELLTQREREVLMHIANGESNKQIARELDLSVRTVET 186 Y S +A LT +P+ P E L+QRE E+ + G+ QIA EL LSV+TV T Sbjct: 122 HKYISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVST 181 Query: 187 HRLNIKRKLNIDGQAELIKFAVES 210 +R + +K+++ A++I +A+++ Sbjct: 182 YRSRVLQKMSMTNNADIIYYAIKN 205 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGING 72 RI+L+DDH L R G+R L+ P ++VV EA + + A D+ LMD+NM G++G Sbjct: 4 RILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLSG 63 Query: 73 IELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 +E L PE AVL+LS+ ++A+ + ++ GARGY+LK+ + +V +I+ +G Sbjct: 64 LEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAGE 123 Query: 133 IYYSAALARQLTQPL------------PPRELLTQREREVLMHIANGESNKQIARELDLS 180 S ++ +L L P + LT RER ++ IA G+SNK+IAR L+++ Sbjct: 124 PVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVA 183 Query: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVE 209 TV+ H N+ RKL + + ++ +AVE Sbjct: 184 ESTVKIHVQNLLRKLQLSSRVQIAVYAVE 212 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 110 bits (276), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 117/210 (55%), Gaps = 6/210 (2%) Query: 7 RAPATTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDIN 66 + A ++++ DDH +VR+GLR + V A + EA+ A D+ L+DI Sbjct: 4 KVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIV 63 Query: 67 MRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIE 126 + NGI++ PE+ VLILS+H + +Y +++++AGA G++ K A +++ AI Sbjct: 64 LPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIR 123 Query: 127 TVRSGGIYYSAALARQLTQPL------PPRELLTQREREVLMHIANGESNKQIARELDLS 180 SG Y S +LA++L + P E L+ RE + ++ IA+G++ IA EL LS Sbjct: 124 QAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLS 183 Query: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVES 210 V+T+ +R + K+ + AEL +A+++ Sbjct: 184 VKTISMYRSRVLSKMKMRHNAELTHYALKN 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 546,943 Number of extensions: 18805 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 12 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)