BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0146.p
         (418 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311276|ref|YP_003775368.1| hypothetical protein Hsero_1956...   788   0.0  

>gi|300311276|ref|YP_003775368.1| hypothetical protein Hsero_1956
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/418 (99%), Positives = 417/418 (99%)

Query: 1   VSASPGRGRDALTRLIVLQFLVSMADWMLIVLLQMLMFELTQSAFQVMLLVLAELAPMLL 60
           +SASPGRGR ALTRLIVLQFLVSMADWMLIVLLQMLMFELTQSAFQVMLLVLAELAPMLL
Sbjct: 1   MSASPGRGRGALTRLIVLQFLVSMADWMLIVLLQMLMFELTQSAFQVMLLVLAELAPMLL 60

Query: 61  LGPWAGAVTDRSGLRRVLGGSCVARLALLLLLALPAARSSAAPLLAVAALTAVCNRFFSP 120
           LGPWAGAVTDRSGLRRVLGGSCVARLALLLLLALPAARSSAAPLLAVAALTAVCNRFFSP
Sbjct: 61  LGPWAGAVTDRSGLRRVLGGSCVARLALLLLLALPAARSSAAPLLAVAALTAVCNRFFSP 120

Query: 121 AANALLPCLVCPGQLPAANACAMAARMAGMALGAMVGGVLAGVAGNDATILTMGLLMLGC 180
           AANALLPCLVCPGQLPAANACAMAARMAGMALGAMVGGVLAGVAGNDATILTMGLLMLGC
Sbjct: 121 AANALLPCLVCPGQLPAANACAMAARMAGMALGAMVGGVLAGVAGNDATILTMGLLMLGC 180

Query: 181 GGLSLSLPERRRLAATQSPAWRWTLVVQCVAAPGRSGWLAIAAGMLVMAALGSIEILAIV 240
           GGLSLSLPERRRLAATQSPAWRWTLVVQCVAAPGRSGWLAIAAGMLVMAALGSIEILAIV
Sbjct: 181 GGLSLSLPERRRLAATQSPAWRWTLVVQCVAAPGRSGWLAIAAGMLVMAALGSIEILAIV 240

Query: 241 YVKQVLHRPAADVGLLFGAYGAGVVLGLVLSSWHRIVARSDDVIRLSLLLMCVAIGLVSQ 300
           YVKQVLHRPAADVGLLFGAYGAGVVLGLVLSSWHRIVARSDDVIRLSLLLMCVAIGLVSQ
Sbjct: 241 YVKQVLHRPAADVGLLFGAYGAGVVLGLVLSSWHRIVARSDDVIRLSLLLMCVAIGLVSQ 300

Query: 301 VERLGSAALLVSMAGLAEGMVMSLGLLRLYQTVDPSRLGRATALLDSASGAAFLLAVVVT 360
           VERLGSAALLVSMAGLAEGMVMSLGLLRLYQTVDPSRLGRATALLDSASGAAFLLAVVVT
Sbjct: 301 VERLGSAALLVSMAGLAEGMVMSLGLLRLYQTVDPSRLGRATALLDSASGAAFLLAVVVT 360

Query: 361 GLLADTVAADRLIGGLALVLAILSVLLITSGLQGGDVGRAKENVLATKIHENQNDVID 418
           GLLADTVAADRLIGGLALVLAILSVLLITSGLQGGDVGRAKENVLATKIHENQNDVID
Sbjct: 361 GLLADTVAADRLIGGLALVLAILSVLLITSGLQGGDVGRAKENVLATKIHENQNDVID 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,131
Number of extensions: 25586
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,203,190
Effective search space: 397052700
Effective search space used: 397052700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)