BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0143.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311273|ref|YP_003775365.1| two component response regulato...   168   4e-43
gi|300313245|ref|YP_003777337.1| two component response regulato...    71   6e-14
gi|300313896|ref|YP_003777988.1| two component transcription res...    65   4e-12
gi|300314013|ref|YP_003778105.1| two component response regulato...    54   1e-08

>gi|300311273|ref|YP_003775365.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 234

 Score =  168 bits (425), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  VSKGRILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGL 60
          +SKGRILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGL
Sbjct: 1  MSKGRILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGL 60

Query: 61 SGNEVLAAIRQHASTAVIMVT 81
          SGNEVLAAIRQHASTAVIMVT
Sbjct: 61 SGNEVLAAIRQHASTAVIMVT 81


>gi|300313245|ref|YP_003777337.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 71.2 bits (173), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 55/76 (72%)

Query: 6   ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65
           ILI ED  + A+IL AYL R G ++  AADG +ALEL+   +PDLVLLD+ +P ++G +V
Sbjct: 40  ILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVNGWQV 99

Query: 66  LAAIRQHASTAVIMVT 81
           L+ IRQ  +T VI++T
Sbjct: 100 LSQIRQRDNTPVILLT 115


>gi|300313896|ref|YP_003777988.1| two component transcription
          response regulator protein [Herbaspirillum seropedicae
          SmR1]
          Length = 244

 Score = 65.5 bits (158), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 6  ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65
          ILIVED+   A++L  YL   G+  R  A G  AL+  R  RPDL+LLD+MLPG+ G E+
Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77

Query: 66 LAAIRQHASTAVIMVT 81
             +R  +   V+M+T
Sbjct: 78 CRQLRTFSDVPVLMLT 93


>gi|300314013|ref|YP_003778105.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 6  ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65
          IL+VEDD+D +  L   L R GFQ    ADG  AL   +    DLV+LD+ +PGL G  +
Sbjct: 3  ILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGLHL 62

Query: 66 LAAIR-QHASTAVIMVT 81
          L  IR Q   T VI++T
Sbjct: 63 LQRIRSQDIGTPVIVLT 79


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.341    0.144    0.574 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,825
Number of extensions: 19806
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 5
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 129 (54.3 bits)