BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0142.p (401 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311272|ref|YP_003775364.1| two component sensor histidine ... 788 0.0 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 158 8e-40 gi|300313246|ref|YP_003777338.1| two component transmembrane sen... 144 2e-35 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 97 3e-21 gi|300310593|ref|YP_003774685.1| phosphate regulon two-component... 90 3e-19 >gi|300311272|ref|YP_003775364.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/401 (98%), Positives = 398/401 (99%) Query: 1 MSAPLRTHTRARQLWYWISLRMIALALLAALLVGAGMWLRFFWWEARLRERIPEAILDEL 60 MSAPLRTHTRARQLWYWISLRMIALALLAALLVG GMWLRFFWWEARLRERIPEAILDEL Sbjct: 1 MSAPLRTHTRARQLWYWISLRMIALALLAALLVGTGMWLRFFWWEARLRERIPEAILDEL 60 Query: 61 KRLENDPYADAERLRQIYGQYLYGDYFTPEVLQADLLWFSLLVLIALPLIVGAGLMLSLR 120 KRLENDPY DAERLRQIYGQYLYGDYFTPEVLQADLLWFSLLVLIALPLIVGAGLMLSLR Sbjct: 61 KRLENDPYTDAERLRQIYGQYLYGDYFTPEVLQADLLWFSLLVLIALPLIVGAGLMLSLR 120 Query: 121 LSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDALMRDVNEMAERLERRERELHASSA 180 LSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDALMRDVNEMAERLERRERELHASSA Sbjct: 121 LSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDALMRDVNEMAERLERRERELHASSA 180 Query: 181 AIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMRQLDQLNRLISDLYLLSLVSAGQL 240 AIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMRQLDQLNRLISDLYLLSLVSAGQL Sbjct: 181 AIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMRQLDQLNRLISDLYLLSLVSAGQL 240 Query: 241 ALVRTQFLLRPLLEERVAWAAPSLRLLPMSTALYCCEHLPLNADRDRLGQAISILIDNAL 300 ALVR+QF LRPLLEER+AWAAPSLRLLPMSTALYCCEHLPLNADRDRLGQAISILIDNAL Sbjct: 241 ALVRSQFQLRPLLEERLAWAAPSLRLLPMSTALYCCEHLPLNADRDRLGQAISILIDNAL 300 Query: 301 RYAASGKLLTISAGLHDGQIHIDVEDDGPGFAPEHLELACDRFWRAEHSRSRHAGGSGLG 360 RYAASGKLLTISAGLHDGQIHIDVEDDGPGFAPEHLELACDRFWRAEHSRSRHAGGSGLG Sbjct: 301 RYAASGKLLTISAGLHDGQIHIDVEDDGPGFAPEHLELACDRFWRAEHSRSRHAGGSGLG 360 Query: 361 LAVAVAICEAHGGKLSVHNRPAGGARMHLELPAEGTAPQGA 401 LAVAVAICEAHGGKLSVHNRPAGGARMHLELPAEGTAPQGA Sbjct: 361 LAVAVAICEAHGGKLSVHNRPAGGARMHLELPAEGTAPQGA 401 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 158 bits (399), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 5/298 (1%) Query: 99 FSLLVLIALPLIVGAGLM---LSLRLSRHLDAVAVAARRLAAGDFSARALSCKQVPAALD 155 F+ ++IA+ ++ A + +S L+R L VA A RLA+GD++ R + + Sbjct: 171 FAAQIIIAVVAVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRV--EVESGDEVG 228 Query: 156 ALMRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMI 215 L +D N++A LER E+ A ++HELRTPL +L+ + DG+ Q L + Sbjct: 229 MLAQDFNQLAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQTLRSL 288 Query: 216 MRQLDQLNRLISDLYLLSLVSAGQLALVRTQFLLRPLLEERVAWAAPSLRLLPMSTALYC 275 +++ LN+L+ DLY LSL AG L R L PLL + A + M + Sbjct: 289 KSEVEHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCEL 348 Query: 276 CEHLPLNADRDRLGQAISILIDNALRYAASGKLLTISAGLHDGQIHIDVEDDGPGFAPEH 335 +P++ D RL Q +S L +N+LRY +G L + A L H+ +D PG PE Sbjct: 349 PASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEV 408 Query: 336 LELACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNRPAGGARMHLELPA 393 + +RF+R E SR+R +GG+GLGLA+ I +AH G + P GG R+ + LPA Sbjct: 409 MARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLPA 466 >gi|300313246|ref|YP_003777338.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 153/304 (50%), Gaps = 20/304 (6%) Query: 98 WFSLLVLIALPLIVGAGLMLSLRLSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDAL 157 W + LI L + + + LS R+ L++VA + RR+A GD SARA + +Q L Sbjct: 68 WILVTTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQPLDEAWQL 127 Query: 158 MRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMR 217 + D N MAERLER ++E +AAIAHELRTP+T + RLQG+ DG+F P S ++ Sbjct: 128 INDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPALFSSLLA 187 Query: 218 QLDQLNRLISDLYLLSLVSAGQLALVRTQFLLRPLLEERVAWAAPSLR------LLPMST 271 Q++ L RLI DL ++ L +G L + + L+ + + P+L+ LL Sbjct: 188 QVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFRLLLETGV 247 Query: 272 ALYCCEHLPLNADRDRLGQAISILIDNALRYAASGKLLTIS---AGLHDGQIHIDVEDDG 328 C D R+ QA+ L++N L++A+ G L + AG+H + VED G Sbjct: 248 QRSRC-------DPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHS----LCVEDSG 296 Query: 329 PGFAPEHLELACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNRPAGGARMH 388 PG A ++ D F R + GSGLGLAV I AH G GGA Sbjct: 297 PGIAASDAQMIFDAFHRGARAGDAQQKGSGLGLAVVRTIASAHHGTADCRASELGGACFE 356 Query: 389 LELP 392 + P Sbjct: 357 VRWP 360 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 114/243 (46%), Gaps = 8/243 (3%) Query: 144 ALSCKQVPAALDALMRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDG 203 A+ + P L L+ +NE+ R+ + E+ A +AH+LRTPLT K +L+ + D Sbjct: 206 AIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDK 265 Query: 204 IFDR--SPQQLSMIMRQLDQLNRLISDLYLLSLVSAGQLALVRTQFL-LRPLLEERVAWA 260 D+ + + L+M+ ++++ R L L+ G + + L L L+EE V Sbjct: 266 HQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHF 325 Query: 261 APSLRLLPMSTALYCCEHLPLNADRDRLGQAISILIDNALRYAASGKLLTISAGLHDGQI 320 + + L DR L I LIDNA+RY+ +T+ Sbjct: 326 IEEADKKRIDLG-FDLRPARLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDAT 384 Query: 321 HIDVEDDGPGFAPEHLELACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNR 380 + VED GPG APEH EL DRF+RA GSGLGLA+ I HGG +SV + Sbjct: 385 VLSVEDSGPGIAPEHRELIFDRFYRANDK----VAGSGLGLAIVREIAHDHGGVISVDCK 440 Query: 381 PAG 383 G Sbjct: 441 EQG 443 >gi|300310593|ref|YP_003774685.1| phosphate regulon two-component sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 436 Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 17/244 (6%) Query: 160 DVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQ------GIMDGIFDRSPQQLS 213 DV E +ER++ R+ A+++ HELRTPLT L+ + +G L Sbjct: 195 DVTE-SERIDMMRRDFVANAS---HELRTPLTVINGFLEIALAQPNLEEGT---RMAHLK 247 Query: 214 MIMRQLDQLNRLISDLYLLSLVSAGQLALVRTQFL-LRPLLEERVAWAAPSLRLLPMSTA 272 ++ Q ++ LI D+ L+ + + L RT+ L +RPLLE R+A +L Sbjct: 248 LMTEQGQRMQNLIDDMLTLTRLESIDYPL-RTEVLRVRPLLE-RIAEEGRALSAGKHEIV 305 Query: 273 LYCCEHLPLNADRDRLGQAISILIDNALRYAASGKLLTISAGLHDGQIHIDVEDDGPGFA 332 L + L + + L A + L+ NA+RY G +++ + H V+D G G + Sbjct: 306 L-TIDGPDLKGNAEELRSAFTNLVTNAVRYTPEGGRISLRWQSDEQGAHFAVQDTGIGIS 364 Query: 333 PEHLELACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNRPAGGARMHLELP 392 PEH+ +RF+R + SRSR G+GLGLA+ + H L + + P G+ + P Sbjct: 365 PEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFP 424 Query: 393 AEGT 396 + T Sbjct: 425 STQT 428 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,203,999 Number of extensions: 47518 Number of successful extensions: 393 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 366 Number of HSP's successfully gapped: 35 Length of query: 401 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 314 Effective length of database: 1,207,925 Effective search space: 379288450 Effective search space used: 379288450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)