BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0140.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion pro...   314   8e-87
gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD ...   110   2e-25

>gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  314 bits (804), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/163 (97%), Positives = 160/163 (98%)

Query: 1   MNRSLQHPLFAGLLLVVLAAVGWTGWAWWRDADAPAGLVSSNGRLEATEVDIGSRLGGRI 60
           MNRSLQHPLFAGLLLVVLAAVGWTGWAWWRDADAPAGLVSSNGRLEATEVDIGSRLGGRI
Sbjct: 1   MNRSLQHPLFAGLLLVVLAAVGWTGWAWWRDADAPAGLVSSNGRLEATEVDIGSRLGGRI 60

Query: 61  RHMLVDEGEAVQAGQVLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQRSA 120
           RHMLVDEGEAVQAGQVLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQR A
Sbjct: 61  RHMLVDEGEAVQAGQVLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQRIA 120

Query: 121 QALTIQRHKSLSAATRRVERSQPLGRMQALNAQEVDDEENALA 163
           QALT+QRHKSLSAATRRVERSQPLGRMQAL AQEVDDEEN LA
Sbjct: 121 QALTVQRHKSLSAATRRVERSQPLGRMQALTAQEVDDEENTLA 163


>gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD
           family secretion protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 86/122 (70%)

Query: 37  GLVSSNGRLEATEVDIGSRLGGRIRHMLVDEGEAVQAGQVLAYLQVDSLHAQLREARAQQ 96
           G  S NGR+EATEVD+ ++LGGR+  +LV+EG+ V AGQ LA +QV SL AQ  EA A Q
Sbjct: 40  GFTSGNGRIEATEVDVATKLGGRVDAILVNEGDFVSAGQPLARMQVLSLQAQRDEALAHQ 99

Query: 97  QRASQGVTVAQAQLAMRRSEQRSAQALTIQRHKSLSAATRRVERSQPLGRMQALNAQEVD 156
           Q++   V  A+AQ+A+R+S+ ++A A T+QR   L AA RR+ RS+ L R  A + QEVD
Sbjct: 100 QQSLSAVASAEAQVAVRQSDYQAALAQTVQRESELDAARRRLARSEVLVREGASSVQEVD 159

Query: 157 DE 158
           D+
Sbjct: 160 DD 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,513
Number of extensions: 30590
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)