BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0139.p (913 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 1833 0.0 gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 1163 0.0 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 130 4e-31 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 124 4e-29 gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC tra... 121 2e-28 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 1833 bits (4749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 907/913 (99%), Positives = 908/913 (99%) Query: 1 MTAPICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIR 60 MTAPICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIR Sbjct: 1 MTAPICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIR 60 Query: 61 AGRIDVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERR 120 AGRIDVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERR Sbjct: 61 AGRIDVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERR 120 Query: 121 QRIDDLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQ 180 QRIDDLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQ Sbjct: 121 QRIDDLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQ 180 Query: 181 FWELIARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGAPAALLARTGASSLE 240 FWELIARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATG PAALLARTGASSLE Sbjct: 181 FWELIARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGTPAALLARTGASSLE 240 Query: 241 SAFIALLPAHRKAGHEALSIPPLETHADDIAIEAENLSMRFADGFTAVDHVSFRIRRGEI 300 AFIALLPAHRKAGHEALSIPPLETHADDIAIEAENLSMRFADGFTAVDHVSFRIRRGEI Sbjct: 241 RAFIALLPAHRKAGHEALSIPPLETHADDIAIEAENLSMRFADGFTAVDHVSFRIRRGEI 300 Query: 301 FGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDL 360 FGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDL Sbjct: 301 FGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDL 360 Query: 361 SVRQNLALHARLFHLPPAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIH 420 SVRQNLALHARLFHLP AQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIH Sbjct: 361 SVRQNLALHARLFHLPAAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIH 420 Query: 421 GPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGK 480 GPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGK Sbjct: 421 GPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGK 480 Query: 481 VLDSDTPAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQTSAMPPGLPSHPAPPTS 540 VLDSDTPAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQT+AMPPGLPSHPAPPTS Sbjct: 481 VLDSDTPAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQTAAMPPGLPSHPAPPTS 540 Query: 541 FSWQRMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLTYAVLDQDQSS 600 FSWQRMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGL YAVLDQDQSS Sbjct: 541 FSWQRMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSS 600 Query: 601 ASRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGA 660 ASRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGA Sbjct: 601 ASRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGA 660 Query: 661 WINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAIL 720 WINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAIL Sbjct: 661 WINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAIL 720 Query: 721 PAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLL 780 PAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLL Sbjct: 721 PAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLL 780 Query: 781 MSMAAVTLLELPVKGSYAALTLATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPA 840 MSMAAVTLLELPVKGSYAAL LATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPA Sbjct: 781 MSMAAVTLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPA 840 Query: 841 TQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVV 900 TQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVV Sbjct: 841 TQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVV 900 Query: 901 MGLAVLMLRKQEG 913 MGLAVLMLRKQEG Sbjct: 901 MGLAVLMLRKQEG 913 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/915 (63%), Positives = 709/915 (77%), Gaps = 9/915 (0%) Query: 6 CAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRID 65 C AR+ V+ YGK AL V LDIP GCM GLIGPDGVGKS+LLSL+AGAR ++ G + Sbjct: 9 CVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGARALQQGELA 68 Query: 66 VLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRIDD 125 VLGGD+ Q HR P IAYMPQGLGKNLYPTLSVEENLQF RLFGQDA ERR+RID+ Sbjct: 69 VLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDASERRRRIDE 128 Query: 126 LTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELI 185 LT STGL FLARPAG+LSGGMKQKL LCC+LIHDPDLLILDEPTTGVDPL+RAQFW+LI Sbjct: 129 LTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLI 188 Query: 186 ARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGAPAALLARTGASSLESAFIA 245 A +RQ+ GMSVIVATAYM+EA FDWL MD+G+VLATG P L RTG +SLE AFIA Sbjct: 189 AHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTGTASLEEAFIA 248 Query: 246 LLPAHRKAGHEALSIPPLETHADD-IAIEAENLSMRFADGFTAVDHVSFRIRRGEIFGFL 304 LLP ++ GH+ + + PL+ D +AIEA+ L+MRF D F AVDHV FRIRRGEIFGFL Sbjct: 249 LLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGD-FLAVDHVDFRIRRGEIFGFL 307 Query: 305 GSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDLSVRQ 364 GSNGCGK+TTMKMLTGLLPAS G+A LFG+EIDPRD+ R RVGYMSQ+FSLY +LSVRQ Sbjct: 308 GSNGCGKSTTMKMLTGLLPASEGQAWLFGREIDPRDMATRARVGYMSQAFSLYGELSVRQ 367 Query: 365 NLALHARLFHLPPAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIHGPEI 424 NL LHARL+ +P QI R EMARRF L+ VMDSL LP+GIRQRLSLAVA +H PE+ Sbjct: 368 NLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPEL 427 Query: 425 LILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGKVLDS 484 LILDEPTSGVDP+ARD FWQL++ L+R+D+VTIF+STHFMNEALRCDR+S+MHAG+VL S Sbjct: 428 LILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISLMHAGRVLVS 487 Query: 485 DTPAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQTSAMPPGLPSHPAPPTSFS-- 542 TP ALM +RGA TLEQAFIGYL +A A + + PA + Sbjct: 488 ATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASPAASPAPRLS 547 Query: 543 -WQ----RMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLTYAVLDQD 597 W+ R LSY+ RE+LELRRDPVRAT+ALLG+ +LMF+IGYGI+ DV L+YAVLD+D Sbjct: 548 RWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLDRD 607 Query: 598 QSSASRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVE 657 Q+ S++YA L S YF E+ P+ +LD+RMR+G+++LAIEIP GF R +A G VE Sbjct: 608 QTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHTVE 667 Query: 658 IGAWINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLP 717 +GAW++GAMP+RAETV+ YVQGMHQ WL G+ I+TR RYN D++SLP Sbjct: 668 VGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYNPDVKSLP 727 Query: 718 AILPAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFN 777 A++PA+IPLLL+ +PAMLTAL+VVREKELG+I+N YVTPV+R EFL GKQLPY+ LGM N Sbjct: 728 AMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPYLLLGMLN 787 Query: 778 FLLMSMAAVTLLELPVKGSYAALTLATLVYLVIATGMGLVASALTRSQIAAMFAALLGTL 837 F ++++ AVT+ +PVKGS LTLA LV+++ +TG GL+AS T SQIAA+F ++GT+ Sbjct: 788 FAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALFVTMIGTI 847 Query: 838 VPATQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATL 897 +P QFAG+ PVS+LEGMG L+G ++PATH ISRGV+ KAL L D+A+S L+ Sbjct: 848 IPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSFWPLVVAA 907 Query: 898 PVVMGLAVLMLRKQE 912 PV++GL+VL+L+KQE Sbjct: 908 PVILGLSVLLLKKQE 922 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 143/493 (29%), Positives = 242/493 (49%), Gaps = 49/493 (9%) Query: 13 VSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRIDVLGGDIG 72 + ++ AL+ V L + G + L+G +G GKSTL+ ++ G G+I++ G I Sbjct: 18 IHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIELDGRAIA 77 Query: 73 QAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARL---FGQ-DAQERRQRIDDLTH 128 A+ +A I+ + Q + NL P LSV EN+ F+ R FG+ D + + L Sbjct: 78 PASTLEAQALGISTVYQEV--NLCPNLSVAENI-FVGRYPTRFGRIDWKSVHTQSRQLLQ 134 Query: 129 STGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELIARL 188 + +A P ++Q +++ AL +LILDEPT+ +D Q ++++ RL Sbjct: 135 QLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVLRRL 194 Query: 189 RQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGAPAA--LLARTGASSLESAFIAL 246 R++ GM+++ T ++D Q ++ + D+ VL G L++ L + + + Sbjct: 195 REQ--GMAILFVTHFLD--QTYE---ISDRITVLRNGVREGEYLVSELSRLDLVNKMVGV 247 Query: 247 LPA-HRK--AGHEALSIPPLETHA---DDIAIEAENLSMRFADGFTAVDHVSFRIRRGEI 300 HRK AG EAL+ L T A + ++AE R G A ++RRGE+ Sbjct: 248 TAVDHRKVEAGAEALA-SELSTDAAAAGAVFLQAEGFGRR---GVLAPQ--DLQLRRGEV 301 Query: 301 FGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEID---PRDVCLRKRVGYMSQSFSLY 357 FG G G G+T ++L G A G+ R+ G+E+ PRD + +G+ S+ Sbjct: 302 FGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVPRD-AIAAGIGFCSEDRKKE 360 Query: 358 K---DLSVRQN--LALHAR--LFHLPPAQIGPRVAEMARRFALMPVMDSLAADLPMGI-- 408 +LSVR+N LAL AR LF + P + R ++A + + + + P+G+ Sbjct: 361 GAILELSVRENIILALQARQGLFRVLPRK---RQNQIAADYVKWLGIKTADLETPIGLLS 417 Query: 409 ---RQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMN 465 +Q+ LA P +LILDEPT G+D A+ ++ + R+ +F+S+ + Sbjct: 418 GGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSE-IP 476 Query: 466 EALRC-DRMSMMH 477 E LRC DRM ++ Sbjct: 477 EVLRCSDRMLVLR 489 Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 17/207 (8%) Query: 284 GFTAVDHVSFRIRRGEIFGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCL 343 G A+ V R+ GE+ +G NG GK+T +K+LTG+ G+ L G+ I P Sbjct: 24 GVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIELDGRAIAPASTLE 83 Query: 344 RKRVGYMS--QSFSLYKDLSVRQNLALHARLFHLPPAQIG----PRVAEMARRFALMPVM 397 + +G + Q +L +LSV +N+ P + G V +R+ + Sbjct: 84 AQALGISTVYQEVNLCPNLSVAENI-----FVGRYPTRFGRIDWKSVHTQSRQLLQQLQI 138 Query: 398 D-SLAADL---PMGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLSRRD 453 D +AA L P+ I+Q ++++ A ++LILDEPTS +D +++L L R Sbjct: 139 DIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVLRRL-REQ 197 Query: 454 KVTIFLSTHFMNEALR-CDRMSMMHAG 479 + I THF+++ DR++++ G Sbjct: 198 GMAILFVTHFLDQTYEISDRITVLRNG 224 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 136/507 (26%), Positives = 239/507 (47%), Gaps = 63/507 (12%) Query: 4 PICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGR 63 P+ A R +V + AL + + ++ G + L+G +G GKSTL+ +++G + +G Sbjct: 21 PVIALR--NVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGD 78 Query: 64 IDVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIAR-------LFGQDA 116 I + G + R A I + Q L NL LS +N+ FI R LF + Sbjct: 79 ILLDGKPVEITEPRQAQALGIGIIHQEL--NLMNHLSAAQNI-FIGREPRKAMGLFIDED 135 Query: 117 QERRQ--------RIDDLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDE 168 + RQ R+D + P + P G+L+ +Q + + AL D +LI+DE Sbjct: 136 ELNRQAAAIFARMRLD-------MDP--STPVGELTVARQQMVEIAKALSFDSRVLIMDE 186 Query: 169 PTTGVDPLARAQFWELIARLRQRHPGMSVIVATAYMDE-AQAFDWLAVMDQGQVLATGAP 227 PT ++ A+ + +I L+ + G+ ++ + MDE Q D ++VM G+ +AT P Sbjct: 187 PTAALNNAEIAELFRIIRDLQAQ--GVGIVYISHKMDELRQIADRVSVMRDGKYIAT-VP 243 Query: 228 AALLARTGASSLESAFIALLPAHRKAGHEALSIPPLETHADDIAIEAENLSMRFADGFTA 287 +S+++ I+++ G + IPP +T +D+ +E L+ A Sbjct: 244 MQ------ETSMDT-IISMMVGRALDGEQ--RIPP-DTSRNDVVLEVRGLNR-----GRA 288 Query: 288 VDHVSFRIRRGEIFGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEI---DPRDVCLR 344 + VSF +R+GEI GF G G G+T + + G P +G + G + P D Sbjct: 289 IRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAH 348 Query: 345 KRVGYMSQS---FSLYKDLSVRQNLALHA-----RLFHLPPAQIGPRVAEMARRFAL-MP 395 +GY+S+ F L + V+ N+AL + R+ + I R+ A+ P Sbjct: 349 G-IGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTP 407 Query: 396 VMDSLAADLPMGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKV 455 ++ A L G +Q++ +A + +IL DEPT G+D A+ ++LL L+ + K Sbjct: 408 SVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKA 467 Query: 456 TIFLSTHFMNEALRCD-RMSMMHAGKV 481 + +S+ + E LR R+ +M G++ Sbjct: 468 IVMISSE-LPEVLRMSHRVLVMCEGRI 493 Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 14/217 (6%) Query: 276 NLSMRFADGFTAVDHVSFRIRRGEIFGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQE 335 N+ RF G A+D+ F + GE+ +G NG GK+T MK+L+G+ SG L G+ Sbjct: 27 NVCKRFP-GVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKP 85 Query: 336 I---DPRDVCLRKRVGYMSQSFSLYKDLSVRQNLAL-----HARLFHLPPAQIGPRVAEM 387 + +PR +G + Q +L LS QN+ + A + ++ + A + Sbjct: 86 VEITEPRQAQALG-IGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAI 144 Query: 388 ARRFALMPVMDSLAADLPMGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLV 447 R L + +L + +Q + +A A +LI+DEPT+ ++ ++++ Sbjct: 145 FARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIR 204 Query: 448 TLSRRDKVTIFLSTHFMNEALR--CDRMSMMHAGKVL 482 L + +++S H M+E LR DR+S+M GK + Sbjct: 205 DLQAQGVGIVYIS-HKMDE-LRQIADRVSVMRDGKYI 239 >gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 126/238 (52%), Gaps = 13/238 (5%) Query: 287 AVDHVSFRIRRGEIFGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRD-VCLRK 345 AVD VS ++ GEI FLG +GCGKTTT+KM+ L+ +SGR L GQ+ D V LR+ Sbjct: 21 AVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTSGIDEVELRR 80 Query: 346 RVGYMSQSFSLYKDLSVRQNLALHARLFHLPPAQIGPRVAEMARRFALMP--VMDSLAAD 403 +GY+ Q L+ ++++ +N+ + RL + R E+ AL P + + Sbjct: 81 HIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVALDPKKFLKRYPRE 140 Query: 404 LPMGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHF 463 L G +QR+ + A +L++DEP VDP+ R+ + R+ T+ + +H Sbjct: 141 LSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLNKTVIMVSHD 200 Query: 464 MNEALRC-DRMSMMHAGKVLDSDTPAALMHKRGAATLEQAFIGY--------LVQAGQ 512 ++EA++ D++++ AGK++ D P L+ R AF+G LV+AG+ Sbjct: 201 IDEAIKLGDKVAVFRAGKLVQFDNPDTLL-ARPKDDFVSAFVGQDHTLKRLLLVRAGE 257 Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 14/229 (6%) Query: 22 ALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRIDVLGGD---IGQAAHRD 78 A+ V L + G + +GP G GK+T L +I +GR+ + G D I + R Sbjct: 21 AVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTSGIDEVELRR 80 Query: 79 AVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRIDDLTHSTGLQP--FL 136 +G Y+ Q +G L+P +++EEN+ + RL G D + ++R +L L P FL Sbjct: 81 HIG----YVIQQIG--LFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVALDPKKFL 134 Query: 137 ARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELIARLRQRHPGMS 196 R +LSGG +Q++ + AL D +L++DEP VDP+ R ++ QR + Sbjct: 135 KRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQM-QRQLNKT 193 Query: 197 VIVATAYMDEAQAF-DWLAVMDQGQVLATGAPAALLARTGASSLESAFI 244 VI+ + +DEA D +AV G+++ P LLAR SAF+ Sbjct: 194 VIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARP-KDDFVSAFV 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,737,284 Number of extensions: 116167 Number of successful extensions: 1107 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 757 Number of HSP's successfully gapped: 254 Length of query: 913 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 819 Effective length of database: 1,174,780 Effective search space: 962144820 Effective search space used: 962144820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)