BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0138.p (375 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme... 736 0.0 gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme... 403 e-113 gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 71 1e-13 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 67 3e-12 >gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/375 (98%), Positives = 374/375 (99%) Query: 1 MRQGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAVPDTLSNAAIAIVDDDD 60 MRQGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASA+PDTLS+AAIAIVD+DD Sbjct: 1 MRQGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAIPDTLSHAAIAIVDEDD 60 Query: 61 SPLSQRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQL 120 SPLSQRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQL Sbjct: 61 SPLSQRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQL 120 Query: 121 NVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSV 180 NVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSV Sbjct: 121 NVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSV 180 Query: 181 LQIIDNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLS 240 LQIIDNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLS Sbjct: 181 LQIIDNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLS 240 Query: 241 LHGMVRGLLGVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLI 300 LHG+VRGLL VPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLI Sbjct: 241 LHGVVRGLLDVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLI 300 Query: 301 LLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILL 360 LLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILL Sbjct: 301 LLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILL 360 Query: 361 WVSLRRLRTMLTQMN 375 WVSLRRLRTMLTQMN Sbjct: 361 WVSLRRLRTMLTQMN 375 >gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/374 (57%), Positives = 282/374 (75%) Query: 1 MRQGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAVPDTLSNAAIAIVDDDD 60 MR AN+++L +KELWSL RD ML LI +F+ +Y AA+A+P++L +AAIAIVD+D Sbjct: 1 MRNSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDS 60 Query: 61 SPLSQRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQL 120 SPLS R+AA+F P F + ++ + DAGLD G Y FVL PA Q + + VQL Sbjct: 61 SPLSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQL 120 Query: 121 NVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSV 180 NVDATRM QA++G++Y++Q++ E+ +F+Q+++ LALR RFNP LE++WF S+ Sbjct: 121 NVDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSL 180 Query: 181 LQIIDNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLS 240 ++II+N+TML+IIL GAALIREREHGTIEHLLVMPV+P +IM AKV +MG VV +AA S Sbjct: 181 MEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALAS 240 Query: 241 LHGMVRGLLGVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLI 300 L +VRG L VPIEGSV LF+ L LFA T++GI +AT+ARSMPQFG+L +LVLLPL Sbjct: 241 LLLIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQ 300 Query: 301 LLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILL 360 LLSGG+TPRESMPVL+Q +MLAAP+TH V G+ +LYRGAGLE++WPQLLA+F IG +L Sbjct: 301 LLSGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLF 360 Query: 361 WVSLRRLRTMLTQM 374 +L R R ++QM Sbjct: 361 MAALGRFRKTISQM 374 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 86/362 (23%), Positives = 156/362 (43%), Gaps = 17/362 (4%) Query: 2 RQGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAVPDTLSNAAIAIVDDDDS 61 R L + +E L RD V L +L +++ + + N + A++D D + Sbjct: 550 RTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLDRDQT 609 Query: 62 PLSQRLAAAFMAPQF--SPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQ 119 LSQ A ++ P E+D + +G + P G + G EV Sbjct: 610 GLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHTVEVG 669 Query: 120 LNVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPRE-AATLALRARFNPALEKTWFS 178 VD +A + YV+ + QL + R + A + R R+NP + K+ + Sbjct: 670 AWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYNPDV-KSLPA 728 Query: 179 SVLQIIDNI-TMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAK---VLAMGGVVL 234 V II + M+ +L +++RE+E G+I +L V PVS + + K L +G +L Sbjct: 729 MVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPYLLLG--ML 786 Query: 235 VAATLSLHGMVRGLLGVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLML 294 A L+L + + GVP++GS+ A + + +T G+ +T S + M+ Sbjct: 787 NFAMLTLLAVT--VFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALFVTMI 844 Query: 295 -VLLPLILLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLE----MVWPQL 349 ++P + +G P S+ + + P+TH + + GV + L+ WP + Sbjct: 845 GTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSFWPLV 904 Query: 350 LA 351 +A Sbjct: 905 VA 906 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 17/349 (4%) Query: 9 WQLTLKELW----SLWRDRVMLCLIVLSFTGMVYSAASAVPDTLSNAAIAIVDDDDSPLS 64 WQ L W L RD V + +L +++ + ++ A++D D S S Sbjct: 543 WQRMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSAS 602 Query: 65 QRLAAAFMA-PQF---SPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQL 120 + AAA A P F +P Q A++D + G + P+G +L G+ E+ Sbjct: 603 RDYAAALRASPYFQERAPLQ--GPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGA 660 Query: 121 NVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAA-TLALRARFNPALEKTWFSS 179 ++ +A + AYV+ + Q + + Q+ Q P+ A + R R+N L Sbjct: 661 WINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAIL 720 Query: 180 VLQIIDNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATL 239 I + L +L A++RE+E G I + V PV+ ++ + K L + L Sbjct: 721 PAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPY--IALGMFNF 778 Query: 240 SLHGMVR-GLLGVPIEGSVGLFLFGAALSLFANTALGISLATVARSM--PQFGLLLMLVL 296 L M LL +P++GS + L T +G+ + + RS F LL L Sbjct: 779 LLMSMAAVTLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLG-TL 837 Query: 297 LPLILLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMV 345 +P +G TP ++ + + + P+TH+ + GV + GL V Sbjct: 838 VPATQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADV 886 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 969,449 Number of extensions: 35314 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 4 Length of query: 375 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 288 Effective length of database: 1,207,925 Effective search space: 347882400 Effective search space used: 347882400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)