BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0136.p
         (621 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311266|ref|YP_003775358.1| excinuclease ABC subunit C [Her...  1269   0.0  

>gi|300311266|ref|YP_003775358.1| excinuclease ABC subunit C
           [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score = 1269 bits (3284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/621 (99%), Positives = 619/621 (99%)

Query: 1   MSDLPASPLPDPREAVLETVARLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTL 60
           MSDLPASPLPDPREAVLETVARLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTL
Sbjct: 1   MSDLPASPLPDPREAVLETVARLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTL 60

Query: 61  TSPRIAMMVERIARLETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKITGHA 120
           TSPRIAMMVERIARLETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKITGHA
Sbjct: 61  TSPRIAMMVERIARLETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKITGHA 120

Query: 121 FPRMAYYRGAVDKRNQYFGPFPNAGAVKESIQILQKVFLLRTCEDTVFSNRTRPCLLHQI 180
           FPRMAYYRGAVDKRNQYFGPFPNAGAVKESIQILQKVFLLRTCEDTVFSNRTRPCLLHQI
Sbjct: 121 FPRMAYYRGAVDKRNQYFGPFPNAGAVKESIQILQKVFLLRTCEDTVFSNRTRPCLLHQI 180

Query: 181 HRCSGPCVNLVSREDYAIDVENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQ 240
           HRCSGPCVNLVSREDYAIDVENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQ
Sbjct: 181 HRCSGPCVNLVSREDYAIDVENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQ 240

Query: 241 IGSLSSVLHQQSMETVSDADIDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAM 300
           IGSLSSVLHQQSMETVSDADIDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAM
Sbjct: 241 IGSLSSVLHQQSMETVSDADIDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAM 300

Query: 301 DTAEDSIDVEVLKAFLAQHYIDKFIPGSLIVGTEFDDPALMMALMEQCGHRITLTFQPQG 360
           DTAEDSIDVEVLKAFLAQHYIDKFIPGSLIVGTEFDDPALMMALMEQCGHRITLTFQPQG
Sbjct: 301 DTAEDSIDVEVLKAFLAQHYIDKFIPGSLIVGTEFDDPALMMALMEQCGHRITLTFQPQG 360

Query: 361 QRRQWLEMAAKGAEIALARLLSEQGSQQARTRALADVLELERDDLDELRAECFDISHTQG 420
           QRRQWLEMAAKGAEIALARLLSEQGSQQARTRALADVLELERDDLDELRAECFDISHTQG
Sbjct: 361 QRRQWLEMAAKGAEIALARLLSEQGSQQARTRALADVLELERDDLDELRAECFDISHTQG 420

Query: 421 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVRPDIVL 480
           EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGV PDIVL
Sbjct: 421 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVMPDIVL 480

Query: 481 IDGGKGQVEMARQVLTELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALM 540
           IDGGKGQVE ARQVLTELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALM
Sbjct: 481 IDGGKGQVETARQVLTELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALM 540

Query: 541 LIAQIRDEAHRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVD 600
           LIAQIRDEAHRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVD
Sbjct: 541 LIAQIRDEAHRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVD 600

Query: 601 DLASVEGISRQLAEEIYRQLH 621
           DLASVEGISRQLAEEIYRQLH
Sbjct: 601 DLASVEGISRQLAEEIYRQLH 621


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,737,657
Number of extensions: 68706
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 2
Length of query: 621
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 530
Effective length of database: 1,188,985
Effective search space: 630162050
Effective search space used: 630162050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)