BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0131.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311261|ref|YP_003775353.1| GTP-binding ERA protein [Herbas...   628   0.0  
gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/fu...    67   2e-12
gi|300312253|ref|YP_003776345.1| GTP-binding protein [Herbaspiri...    65   7e-12

>gi|300311261|ref|YP_003775353.1| GTP-binding ERA protein
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  628 bits (1619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/304 (99%), Positives = 303/304 (99%)

Query: 1   MADDASAQTPDSDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQT 60
           MADDASAQTPDSDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQT
Sbjct: 6   MADDASAQTPDSDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQT 65

Query: 61  IENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLL 120
           IENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLL
Sbjct: 66  IENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLL 125

Query: 121 PANVPCILVLNKADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLL 180
           PANVPCILVLNKADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLL
Sbjct: 126 PANVPCILVLNKADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLL 185

Query: 181 PQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAA 240
           PQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAA
Sbjct: 186 PQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAA 245

Query: 241 ILVERDNHKAMVIGQKGARLKEISTQSRLDMERLFGGPVYLEIWVKVKSGWADNEAGLRA 300
           ILVERDNHKAMVIGQKGARLKEISTQSR DMERLFGGPVYLEIWVKVKSGWADNEAGLRA
Sbjct: 246 ILVERDNHKAMVIGQKGARLKEISTQSRQDMERLFGGPVYLEIWVKVKSGWADNEAGLRA 305

Query: 301 YGYE 304
           YGYE
Sbjct: 306 YGYE 309


>gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/furan
           oxidation) GTPase [Herbaspirillum seropedicae SmR1]
          Length = 479

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 12/139 (8%)

Query: 21  IVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRHSN 80
           + G+PNVGKS+L+NVL G+ V+I +  A TTR ++T    IE      +DT G +    +
Sbjct: 239 LAGKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDD 298

Query: 81  ALNK------TLNRTVTNTLTAADVILFVIEAGTFGPA--DKQVLDLLPANVPCILVLNK 132
                      + RT    +  ADVIL +++A   GP   D+++    P  VP I + NK
Sbjct: 299 GSGPDEVERIGIERTWAE-VAKADVILHMLDADR-GPTLEDEKITSRFPDGVPIIRIWNK 356

Query: 133 ADRNKDKTTL--MPFAREV 149
            DR+  K  +  MP A  V
Sbjct: 357 IDRSGHKAAVDKMPDATHV 375


>gi|300312253|ref|YP_003776345.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 19  IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRH 78
           IA+VGRPNVGKSTL N L  ++ ++ +     TR R  G   +    ++ +DT GF+   
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVA 64

Query: 79  SNALNKTLNRTVTNTLTAADVILFVIEA-GTFGPADKQVLDLL-PANVPCILVLNKADRN 136
            + +   + +     +  ADV++F+++      P DK + D L     P +LV+NK++  
Sbjct: 65  KDGIMYEMAKQTKQAVVEADVVVFIVDGRQGLTPHDKTITDFLRKCGRPVLLVVNKSEGM 124

Query: 137 K 137
           K
Sbjct: 125 K 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 883,776
Number of extensions: 32892
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)