BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0117.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311247|ref|YP_003775339.1| 3-oxoacyl-[acyl-carrier-protein...   670   0.0  
gi|300313493|ref|YP_003777585.1| 3-oxoacyl-(acyl-carrier-protein...   125   7e-30

>gi|300311247|ref|YP_003775339.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase III [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/328 (99%), Positives = 327/328 (99%)

Query: 1   MTTYSKIIGTGSYLPAKRVTNQELAAQLAEQGIETSHEWIVTRSGISARHYAEPAELSSD 60
           MTTYSKIIGTGSYLPAKRVTNQELAAQLAEQGIETS EWIVTRSGISARHYAEPAELSSD
Sbjct: 1   MTTYSKIIGTGSYLPAKRVTNQELAAQLAEQGIETSDEWIVTRSGISARHYAEPAELSSD 60

Query: 61  LALQAAQRALQAAGLQPNDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA 120
           LALQAAQRALQAAGLQPNDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA
Sbjct: 61  LALQAAQRALQAAGLQPNDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA 120

Query: 121 VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVVMSASQ 180
           VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVVMSASQ
Sbjct: 121 VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVVMSASQ 180

Query: 181 EPGVLATKLHADGSHGHILCVPGSVNNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE 240
           EPGVLATKLHADGSHGHILCVPGSVNNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE
Sbjct: 181 EPGVLATKLHADGSHGHILCVPGSVNNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALE 240

Query: 241 AANMQSTDVDWLVPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR 300
           AANMQSTDVDWLVPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR
Sbjct: 241 AANMQSTDVDWLVPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVR 300

Query: 301 DGRIQPGHTVMMEGVGGGFTWGAVLVRM 328
           DGRIQPGHTVMMEGVGGGFTWGAVLVRM
Sbjct: 301 DGRIQPGHTVMMEGVGGGFTWGAVLVRM 328


>gi|300313493|ref|YP_003777585.1| 3-oxoacyl-(acyl-carrier-protein)
           synthase III [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  125 bits (313), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 162/315 (51%), Gaps = 20/315 (6%)

Query: 13  YLPAKRVTNQELAAQLAEQGIETSHEWIVTRSGISARHYAEPAELSSDLALQAAQRALQA 72
           YLP+ R +N +LA++      + + +++  + G+  R    P + +SD+A +A ++ L+ 
Sbjct: 11  YLPSGRESNLDLASRF-----DVTEDFLANKIGVLHRTTRSPGQETSDMAFEALEQLLRQ 65

Query: 73  AGLQPNDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQAVCSGFVYAMSVA 132
             +  ++I ++I+ T  PD     P  + ++  +  +       D+   CSG+VY +SV 
Sbjct: 66  GKVVRDEIQVMIVVTQNPD--SRLPHVSGLLHARAALPKQCATFDLSLGCSGYVYGLSVL 123

Query: 133 DSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAVVMSASQEPGVLATKLHAD 192
            SF+++   +  ++I  + +S+I+D +D+ T +LFGD A A ++ A  +P VL       
Sbjct: 124 TSFMQANGLEKGVLITCDPYSKIVDPEDKNTVLLFGDAATATLVGA--DP-VLVPASFDF 180

Query: 193 GSHGHILCVPGSVNNGAVAGSAYLYMDGPAVFKLAVSLLDKVAREALEAANMQSTDVDWL 252
           GS G      GS++         L+M+G  VF  A +++       LE A +   D+D  
Sbjct: 181 GSQGD---ATGSLHE----RDGRLHMNGRDVFNFAATVVPGSVTATLEKAGLDREDIDVY 233

Query: 253 VPHQANIRIMQGTAKKMGLPLEKMVVTVAEHGNTSAASIPLALDQAVRDGRIQPGHTVMM 312
           + HQ +  I++   K++ L   K+ + + + GNT ++SIPL L + + +   Q    +++
Sbjct: 234 LFHQGSRYIVETLTKRLKLDSAKVRIDINDTGNTVSSSIPLLLAKELHNTIAQ---RILL 290

Query: 313 EGVGGGFTWGAVLVR 327
            G G G +W + + +
Sbjct: 291 CGFGVGLSWASCICQ 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,005,008
Number of extensions: 38652
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)