BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0113.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum form...   410   e-116
gi|300312858|ref|YP_003776950.1| inhibition of septum formation ...    82   5e-17

>gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum
           formation inhibitor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 226

 Score =  410 bits (1053), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/226 (97%), Positives = 221/226 (97%)

Query: 11  MRTITPQTHPFPLLTMSHSHLTAPTTRLILGSSSVYRKQLLERLGLPFETMTPDIDETPQ 70
           MRTITPQTHPFPLLTMSHSH TAPTTRLILGSSSVYRKQLLERLGLPFETMTPDIDETPQ
Sbjct: 1   MRTITPQTHPFPLLTMSHSHFTAPTTRLILGSSSVYRKQLLERLGLPFETMTPDIDETPQ 60

Query: 71  AGETPEATALRLARAKAAAARARAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMR 130
           AGETPEATALRLARAKAAA  ARAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMR
Sbjct: 61  AGETPEATALRLARAKAAAIAARAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMR 120

Query: 131 GREVIFHTALCLWDGRRTDAAQAAQLRNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAK 190
           GREVIFHTALCLWDGRRTDAAQAAQL NVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAK
Sbjct: 121 GREVIFHTALCLWDGRRTDAAQAAQLCNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAK 180

Query: 191 NEGLGIAILESIRSDDPTALTGLPLIALTTMLRQAGVGFFGLAAPQ 236
           NEGLGIAILESIRSDDPTALTGLPLIALTTMLRQAGVGFFGL APQ
Sbjct: 181 NEGLGIAILESIRSDDPTALTGLPLIALTTMLRQAGVGFFGLTAPQ 226


>gi|300312858|ref|YP_003776950.1| inhibition of septum formation
           nucleotide-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 204

 Score = 81.6 bits (200), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 14/200 (7%)

Query: 37  RLILGSSSVYRKQLLERLGLPFETMTPD--IDETPQAGETPEATALRLARAKAAAARA-- 92
           ++ L S S  R++LL ++G+ FE +  D  +DE+   GE P     R+ RAK  +A+   
Sbjct: 7   KIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPMDYVARVTRAKLDSAQQTM 66

Query: 93  ---RAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMRGR--EVIFHTALCLWDGRR 147
              +     ++ +D    +D   +GKP +H  A+R + ++ GR  +V+   A+ +  G  
Sbjct: 67  ILRQLPHRPLLSADTTVVVDDLILGKPADHDEAVRMISLLSGRTHQVLTSVAVGVTMGVE 126

Query: 148 TDAAQAAQLRNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAKNEGLGIAILESIRSDDP 207
           T   Q  Q    Q+ V    L++  + AY H  +PYD AG+   +GL    + +I     
Sbjct: 127 TQVWQIVQ----QSDVSFAPLTEQAIAAYCHTVEPYDKAGAYGIQGLASVFISNIVGSH- 181

Query: 208 TALTGLPLIALTTMLRQAGV 227
           + + GLPL     +L+QAGV
Sbjct: 182 SGIMGLPLFETAQLLQQAGV 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 705,464
Number of extensions: 26297
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)