BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0110.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311240|ref|YP_003775332.1| CBS-domain-containing membrane ...   797   0.0  

>gi|300311240|ref|YP_003775332.1| CBS-domain-containing membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/398 (99%), Positives = 395/398 (99%)

Query: 1   MPDSISLWFKSFIPAKANVDRFERMRSCAGSLFGILLVGMVSYAVLPHKAGTIWLIAPMG 60
           MPDSISLWFKSFIPAKANVDRFERMRSCAGSLFGILLVGMVSYAVLPHKAGTIWLIAPMG
Sbjct: 3   MPDSISLWFKSFIPAKANVDRFERMRSCAGSLFGILLVGMVSYAVLPHKAGTIWLIAPMG 62

Query: 61  ASAVLLFAVPSSPLAQPWSIIGGNLCAALIGVTCAKLVPEPALAAALAIALAIGAMFYLR 120
           ASAVLLFAVPSSPLAQPWSIIGGNLCAALIGVTCAKLVPEPALAAALAIALAIGAMFYLR
Sbjct: 63  ASAVLLFAVPSSPLAQPWSIIGGNLCAALIGVTCAKLVPEPALAAALAIALAIGAMFYLR 122

Query: 121 CIHPPSGAVALTAVLGGPAVQAMGYGFVLSPVLLNSVLLLATALFFNNASGRRYPHAQQS 180
           CIHPPSGAVALTAVLGGPAVQAMGYGFVLSPVLLNSVLLLATALFFNNASGRRYPHAQQS
Sbjct: 123 CIHPPSGAVALTAVLGGPAVQAMGYGFVLSPVLLNSVLLLATALFFNNASGRRYPHAQQS 182

Query: 181 AAPHPHHTRDELPITRLGFSHEDLDEVLKRYNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ 240
           AAPHPHHTRDELPITRLGFSHEDLDEVLKRYNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ
Sbjct: 183 AAPHPHHTRDELPITRLGFSHEDLDEVLKRYNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ 242

Query: 241 TLCASVMSRDVVAVEFATGLDEAWRLLQAHRLRALPVIDRGRHVIGIISRSDFLEHAGVE 300
           TLCASVMSRDVVAVEFATGLDEAWRLLQAHRLRALPVIDRGRHVIGIISRSDFLEHAGVE
Sbjct: 243 TLCASVMSRDVVAVEFATGLDEAWRLLQAHRLRALPVIDRGRHVIGIISRSDFLEHAGVE 302

Query: 301 VHTGLTAQLRALLHRVPLLHSDKPEVVGQIMSRPVVTAQVDTPLLELVPRMADGLHQIPV 360
           VHTGLTAQLRALLHRVPLLHSDKPEVVGQIMSRPVVTAQVDTPLLELVPRMADGLHQIPV
Sbjct: 303 VHTGLTAQLRALLHRVPLLHSDKPEVVGQIMSRPVVTAQVDTPLLELVPRMADGLHQIPV 362

Query: 361 VQADGKLAGMLTQSDMIAALYEKNLVAARGGPGLRSAA 398
           VQADGKLAGMLTQSDMIAALYEKNL AAR GP LRSAA
Sbjct: 363 VQADGKLAGMLTQSDMIAALYEKNLAAARSGPSLRSAA 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,190,017
Number of extensions: 48791
Number of successful extensions: 229
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)