BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0106.p (626 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911... 1248 0.0 gi|300309883|ref|YP_003773975.1| GGDEF domain/EAL domain signal ... 97 3e-21 gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709... 95 1e-20 gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o... 95 2e-20 gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane... 86 7e-18 >gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911 [Herbaspirillum seropedicae SmR1] Length = 600 Score = 1248 bits (3228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/600 (100%), Positives = 600/600 (100%) Query: 27 MSGTEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKV 86 MSGTEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKV Sbjct: 1 MSGTEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKV 60 Query: 87 ARAHNMSVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVN 146 ARAHNMSVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVN Sbjct: 61 ARAHNMSVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVN 120 Query: 147 PQRIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVD 206 PQRIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVD Sbjct: 121 PQRIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVD 180 Query: 207 MHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISR 266 MHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISR Sbjct: 181 MHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISR 240 Query: 267 PLPEPPVSISDDVTKTLRRDKVPLDAKKYGPGKHSTTVFKLLRETRYVSPEVSNDTVYDM 326 PLPEPPVSISDDVTKTLRRDKVPLDAKKYGPGKHSTTVFKLLRETRYVSPEVSNDTVYDM Sbjct: 241 PLPEPPVSISDDVTKTLRRDKVPLDAKKYGPGKHSTTVFKLLRETRYVSPEVSNDTVYDM 300 Query: 327 FVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPNPILTEQST 386 FVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPNPILTEQST Sbjct: 301 FVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPNPILTEQST 360 Query: 387 SLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLP 446 SLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLP Sbjct: 361 SLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLP 420 Query: 447 GNVPINDHIEYLLQSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRVLQQACDPEL 506 GNVPINDHIEYLLQSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRVLQQACDPEL Sbjct: 421 GNVPINDHIEYLLQSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRVLQQACDPEL 480 Query: 507 DFIGHIGGDDFLILFQSEDWEKRCRSMLDNFDAETRGFYYDEDVERGGYYTEDRQGNRVF 566 DFIGHIGGDDFLILFQSEDWEKRCRSMLDNFDAETRGFYYDEDVERGGYYTEDRQGNRVF Sbjct: 481 DFIGHIGGDDFLILFQSEDWEKRCRSMLDNFDAETRGFYYDEDVERGGYYTEDRQGNRVF 540 Query: 567 HKLVSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIPGNSLFIERRIPATFSWALKDA 626 HKLVSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIPGNSLFIERRIPATFSWALKDA Sbjct: 541 HKLVSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIPGNSLFIERRIPATFSWALKDA 600 >gi|300309883|ref|YP_003773975.1| GGDEF domain/EAL domain signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 650 Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 2/232 (0%) Query: 44 QRKLTALFQPIVRMRNGEILGYEGLIRGPSNTP-LHSPLALFKVARAHNMSVQMEYLCRH 102 +R+L+ FQPIVR+ +G+++ +E L R S SP+ A + Q+ + Sbjct: 407 ERELSVFFQPIVRLDDGQVIAFEALARWHSTVKGAVSPVEFIPAAERMGIINQLSVILLR 466 Query: 103 IVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIELTENEPTYD 162 L A L N+S + E + E ++ + G P R+ +E+TE D Sbjct: 467 KALAAAASWPAQIRLSFNLSANDINSSEGM-AEIIKLIRESGFCPSRLDLEITETALLQD 525 Query: 163 YAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQF 222 + R R +G I +DD G G++SL L +K+D FV I D + L+ Sbjct: 526 LEKTRQLIHSLRQLGCGITLDDFGTGYASLSHLHALPLTRIKIDKSFVADIGQDAVSLKI 585 Query: 223 VRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLPEPPVS 274 V+S+ + + EG+E+ L +R+LG GQGY +RP+ V+ Sbjct: 586 VKSLLALTLDMDLACVVEGLETPQHLAVLRELGAMYGQGYLYARPMAADDVA 637 >gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1] Length = 598 Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 9/230 (3%) Query: 46 KLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHS---PLALFKVARAHNMSVQM-EYLCR 101 +L FQP VR+R+G +G E LIR + P+H P +A Q+ ++ R Sbjct: 360 ELVLHFQPKVRLRDGACVGVEALIRW--HHPIHGNIPPDVFIPLAEKTGQIRQVTAWVLR 417 Query: 102 HIV--LTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIELTENEP 159 +V + R+ + G + N S E ++ + L V P I IE TE+ Sbjct: 418 QVVAQVARWLKSGRALPVAFNASARDFDSDE-LRELLAQQLKLHKVPPALIEIEFTEHAM 476 Query: 160 TYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMK 219 Q+R R++G ++AIDD G GFS+L + + +K+D F+ + D Sbjct: 477 ANHPQQVRQRVQALRELGVKVAIDDFGAGFSNLSYLKNIPADTMKIDRSFIHRLLDDEAD 536 Query: 220 LQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 V SI +A G V+AEG+ES+ +R LG GQGY I+RP+P Sbjct: 537 QLIVPSILHLAHNLGFSVVAEGLESERTATLLRHLGCDYGQGYAIARPMP 586 >gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of sigma subunit [Herbaspirillum seropedicae SmR1] Length = 422 Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 75/120 (62%) Query: 319 SNDTVYDMFVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPN 378 +N V ++F +L +LPVV PIGLI+R+ + + ++ Y RELY +KSC FMD + Sbjct: 35 NNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYHRELYERKSCIAFMDKD 94 Query: 379 PILTEQSTSLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARH 438 P++ + T ++ L L V + L++GF+I ++GQ GLG+G L+RE+ +Q++ R Sbjct: 95 PLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGLGSGLALMRELVDLQVEKNRQ 154 >gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 797 Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 35/238 (14%) Query: 51 FQPIVRMRNGEILGYEGLIR---------GPSN-------TPLHSPLALFKVARAHNMSV 94 QP + + +G+++G E L+R GP N T L L+ + + +S Sbjct: 551 LQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAETTGFIRMLTLWMMEQVARLSE 610 Query: 95 QMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQ---PEAIQGETLRYLDTLGVNPQRII 151 Q++ Q G+ +N+S L+ P A R+ + P + Sbjct: 611 QLQ------------QQGVQLKFSVNLSTRDLLDQELPTAFAAILQRH----RLQPAALC 654 Query: 152 IELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQ 211 +E+TE+ D A+ +N +MGF ++IDD G G+SSL L + +K+D FV Sbjct: 655 LEITESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKIDKSFVM 714 Query: 212 GINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 + D + VRS ++ G V+AEG+ES+ +R +G GQGY + +P+P Sbjct: 715 KMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPMP 772 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,017,311 Number of extensions: 87107 Number of successful extensions: 286 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 282 Number of HSP's successfully gapped: 20 Length of query: 626 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 535 Effective length of database: 1,188,985 Effective search space: 636106975 Effective search space used: 636106975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)