BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0103.p (315 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311233|ref|YP_003775325.1| LysR family transcription regul... 639 0.0 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 177 1e-45 gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 167 1e-42 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 161 6e-41 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 160 2e-40 >gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/315 (99%), Positives = 314/315 (99%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR 60 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR Sbjct: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR 60 Query: 61 KLRLSESGQDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDF 120 KLRLSESGQDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDF Sbjct: 61 KLRLSESGQDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDF 120 Query: 121 LAAHPKVDVLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLAT 180 LAAHPKVDVLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLAT Sbjct: 121 LAAHPKVDVLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLAT 180 Query: 181 HGTPAHPQALKEHSCIYLGESPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHL 240 HGTPAHPQALKEHSCIYLGESPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHL Sbjct: 181 HGTPAHPQALKEHSCIYLGESPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHL 240 Query: 241 GIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQR 300 GIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQR Sbjct: 241 GIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQR 300 Query: 301 LAQVPTLAGGGKAAR 315 LAQ PTLAGGGKAAR Sbjct: 301 LAQEPTLAGGGKAAR 315 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 7/297 (2%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQ 69 L E+ F V + GSF +AA LG + +A+SR + LE LG++L+QRTTR+L L+E+G Sbjct: 4 LREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63 Query: 70 DIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDV 129 RC+ ++ A + + + A+P G +R++ P G + P P FL HP++ + Sbjct: 64 LYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISL 123 Query: 130 LLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQA 189 + L DR +D+ID+ D+AIRI L+ R+L +CA+P YL HGTPAHP Sbjct: 124 DITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHE 183 Query: 190 LKEHSCIYLGESPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASLPYFI 249 L +H I + + W+F V+V V R N+ + A L +GI P F+ Sbjct: 184 LAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFM 243 Query: 250 ARPALEEGSLVQVLPQWSFRTHYCGEL--WALYPATRHLPPRLGAFVQFLAQRLAQV 304 L G LV +L + EL +A+YP+ HLP ++ A + FL + AQV Sbjct: 244 IDQYLRSGQLVSILGDYG-----APELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQV 295 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 167 bits (422), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 164/307 (53%), Gaps = 14/307 (4%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQ 69 L M VF VV++GS S AA QL + +SR +A LE +G +LL RTTR+L L+ +G Sbjct: 4 LMAMQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGN 63 Query: 70 DIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDV 129 ++ RCR ML ++ + A D P+G +R++ + + V ++ +P V V Sbjct: 64 ELLPRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAV 123 Query: 130 LLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQA 189 L DR ++L+++ +DLAIR+T+ P L+ R L ++CATP YLA HG P + Sbjct: 124 DLLALDRTVNLVEERIDLAIRMTNRLEPNLIARPLGVCRSIICATPDYLARHGLPRKVED 183 Query: 190 LKEHSCI---YLGES--PADARWRFRRQG------KSVNVEVRGRYAANHTGVRLDAVLR 238 L H+C+ Y+G S D + + R G K +V V G +AN V L AVL Sbjct: 184 LALHNCLTHSYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLA 243 Query: 239 HLGIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLA 298 +GI +P + P + G LVQ+LP + G ++ +Y + +H+P L + FLA Sbjct: 244 GVGIGHMPAYTVAPLVASGQLVQLLP--DYEPLQLG-MYGVYASRKHMPATLRTMLDFLA 300 Query: 299 QRLAQVP 305 QR A P Sbjct: 301 QRFAGQP 307 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 161 bits (408), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 163/297 (54%), Gaps = 6/297 (2%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQ 69 LN++A+FA VV GSFS AAR L S +SR +A LE+ LG +LLQR+TR +R++E G Sbjct: 4 LNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTEVGS 63 Query: 70 DIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDV 129 C M NAA+A + V+ A P G++RVS P V H + P + FL AHP V + Sbjct: 64 AFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDVRL 123 Query: 130 LLRLEDRYMDLIDDEVDLAIRI-TDHPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQ 188 L L +R +D+I + D+A+R+ + L+ R +L A+P Y+ HG Q Sbjct: 124 ELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDTVQ 183 Query: 189 ALKEHSCIYLGESPADA-RWRFRR-QGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASLP 246 +L+ + G P A RWR + G+ ++ + + + + +G+A LP Sbjct: 184 SLQGQRGLGPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGLALLP 243 Query: 247 YFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQRLAQ 303 + +A A+ G LV VLPQ+ H +L A++P+ R L P + AF++FLA L+Q Sbjct: 244 FNVAHGAIARGELVVVLPQYRGAPH---QLHAVFPSRRGLVPAVRAFIEFLAVELSQ 297 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 3/293 (1%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQ 69 L M F VVE+GSF A G + A+SR ++ LE+ LG +LL RTTR+L L++ G+ Sbjct: 4 LQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGR 63 Query: 70 DIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDV 129 ARC+++L Q V + G + G++R+ P+ G + P F HP + + Sbjct: 64 VYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITL 123 Query: 130 LLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQA 189 + L DR +DL+++ D+AIRI+ ++ R L + + CA P +LA HGTP P Sbjct: 124 NITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTPAE 183 Query: 190 LKEHSCIYLGESPADARWRFRR-QGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASLPYF 248 L+++ I W FR G + V VR N+ + GIA P F Sbjct: 184 LRDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDF 243 Query: 249 IARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQRL 301 I A++ G LV++ WS + LYP HLPP++ FL ++ Sbjct: 244 IVNAAIQAGQLVELFEGWSTGEQLV--VHTLYPTRTHLPPKVQRMRDFLIEQF 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,028,945 Number of extensions: 45064 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 54 Length of query: 315 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 230 Effective length of database: 1,217,395 Effective search space: 280000850 Effective search space used: 280000850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)