BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0098.p (762 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb... 1539 0.0 gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ... 721 0.0 >gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 780 Score = 1539 bits (3985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 762/762 (100%), Positives = 762/762 (100%) Query: 1 MPSRLVRLLSEARWLALSALLVYLVLILLSYSKTDPGWSVASSVPRVGNWGGRVGAWMAD 60 MPSRLVRLLSEARWLALSALLVYLVLILLSYSKTDPGWSVASSVPRVGNWGGRVGAWMAD Sbjct: 19 MPSRLVRLLSEARWLALSALLVYLVLILLSYSKTDPGWSVASSVPRVGNWGGRVGAWMAD 78 Query: 61 LMLYIFGLSAWWWCVLAARSVWTGYRRLSNRFLVAQPVEPEHQQEPLIRAVGFVFMLTGS 120 LMLYIFGLSAWWWCVLAARSVWTGYRRLSNRFLVAQPVEPEHQQEPLIRAVGFVFMLTGS Sbjct: 79 LMLYIFGLSAWWWCVLAARSVWTGYRRLSNRFLVAQPVEPEHQQEPLIRAVGFVFMLTGS 138 Query: 121 MGIEFTRMHRFAPKLPHSSGGVLGEMIGSAVQPTFGFTGSTLLLLMLFGLGFSLLFHVSW 180 MGIEFTRMHRFAPKLPHSSGGVLGEMIGSAVQPTFGFTGSTLLLLMLFGLGFSLLFHVSW Sbjct: 139 MGIEFTRMHRFAPKLPHSSGGVLGEMIGSAVQPTFGFTGSTLLLLMLFGLGFSLLFHVSW 198 Query: 181 LAAVERIGGLIEDGLFWVRDFFAARADRKAGQEAAVKREETVVQERAKIVEAPPIRIEPQ 240 LAAVERIGGLIEDGLFWVRDFFAARADRKAGQEAAVKREETVVQERAKIVEAPPIRIEPQ Sbjct: 199 LAAVERIGGLIEDGLFWVRDFFAARADRKAGQEAAVKREETVVQERAKIVEAPPIRIEPQ 258 Query: 241 IVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQTVSVETLEFTSRLIEKKLSD 300 IVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQTVSVETLEFTSRLIEKKLSD Sbjct: 259 IVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQTVSVETLEFTSRLIEKKLSD 318 Query: 301 FGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARSLSLTSIRVVEVIQGKNYM 360 FGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARSLSLTSIRVVEVIQGKNYM Sbjct: 319 FGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARSLSLTSIRVVEVIQGKNYM 378 Query: 361 GLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTG 420 GLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTG Sbjct: 379 GLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTG 438 Query: 421 SGKSVGINATILSLLYKSTPRQVRLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALN 480 SGKSVGINATILSLLYKSTPRQVRLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALN Sbjct: 439 SGKSVGINATILSLLYKSTPRQVRLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALN 498 Query: 481 WAVEEMERRYKKMSKLGVRNLAGYNQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVI 540 WAVEEMERRYKKMSKLGVRNLAGYNQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVI Sbjct: 499 WAVEEMERRYKKMSKLGVRNLAGYNQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVI 558 Query: 541 IIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANVPTRIAF 600 IIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANVPTRIAF Sbjct: 559 IIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANVPTRIAF 618 Query: 601 QVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQG 660 QVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQG Sbjct: 619 QVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQG 678 Query: 661 EPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHL 720 EPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHL Sbjct: 679 EPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHL 738 Query: 721 RIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGASDAAE 762 RIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGASDAAE Sbjct: 739 RIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGASDAAE 780 >gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/521 (70%), Positives = 421/521 (80%), Gaps = 8/521 (1%) Query: 234 PIRIEPQIVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQTVSVETLEFTSRL 293 P EP V + D V + + V LP L LLDE P S+ V E L+ T RL Sbjct: 5 PTAPEPAPVSMAYPDYVDEPR-------VEIPLPSLDLLDEVPESRIEVDTEQLQETGRL 57 Query: 294 IEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARSLSLTSIRVVEV 353 IE++L +F V V V+ A GPVITR+E+EPA GV+G+Q+VNL +DL+R+L LTSIRVVE Sbjct: 58 IEQRLKEFKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVET 117 Query: 354 IQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNPVVADLAKMPHL 413 I GK MGLELPN +RQ+++L+EI+ S+ Y S S LT+A+GKDI G PVV DLA+ PH+ Sbjct: 118 IPGKTCMGLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTDLARAPHM 177 Query: 414 LVAGTTGSGKSVGINATILSLLYKSTPRQVRLILIDPKMLELSIYEGIPHLLAPVVTDMR 473 LVAGTTGSGKSV INA ILSLLYK+TP +VRLI+IDPKMLELSIYEGIPHLLAPVVTDMR Sbjct: 178 LVAGTTGSGKSVAINAMILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMR 237 Query: 474 QAGHALNWAVEEMERRYKKMSKLGVRNLAGYNQKIADAEKRGEKIPNPFSLTPDAPEPLE 533 +A HALNWAV+EMERRYKKMSKLGVRNLAGYNQK+ +A RGEKIPNPFSLTPDAPEPLE Sbjct: 238 EAAHALNWAVDEMERRYKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLE 297 Query: 534 QLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKAN 593 +L TIVI+IDELADLMMVVGKKVEELIAR+AQKARAAGIHLILATQRPSVDVITGLIKAN Sbjct: 298 KLPTIVIVIDELADLMMVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKAN 357 Query: 594 VPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVV 653 +PTR+AFQVSSKIDSRT+LDQMGAE+LLG GDML+ PPG+G P RVHGAFVSD+EVHRVV Sbjct: 358 IPTRVAFQVSSKIDSRTVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVV 417 Query: 654 EHLKSQGEPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRASI 713 E+LKS GEP YIE IL + ED A G G E D +YD+AVA VLK RRASI Sbjct: 418 EYLKSFGEPRYIEEILAPPISEDT-AQADMFANGEGGDPEADPLYDEAVAFVLKTRRASI 476 Query: 714 SLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVP 754 S VQR LRIGYNRAARL+EQME +G++S M NG+R+ILVP Sbjct: 477 SSVQRQLRIGYNRAARLVEQMETAGVLSAMSRNGSRDILVP 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,152,952 Number of extensions: 87147 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 360 Number of HSP's successfully gapped: 2 Length of query: 762 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 669 Effective length of database: 1,179,515 Effective search space: 789095535 Effective search space used: 789095535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)