BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0097.p (318 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu... 653 0.0 gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s... 137 2e-33 gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoredu... 63 4e-11 >gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/318 (99%), Positives = 318/318 (100%) Query: 1 MSTTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLG 60 MSTTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLG Sbjct: 1 MSTTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLG 60 Query: 61 VQGPELMQRLLQHAERFKTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQY 120 VQGPELMQRLLQHAERFKTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQY Sbjct: 61 VQGPELMQRLLQHAERFKTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQY 120 Query: 121 LGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTIIHRRD 180 LGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTIIHRRD Sbjct: 121 LGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTIIHRRD 180 Query: 181 KFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIKIKSTQDDAITEIPVHGL 240 KFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIKIKSTQDDAITEIPVHGL Sbjct: 181 KFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIKIKSTQDDAITEIPVHGL 240 Query: 241 FIAIGHKPNTSIFEGQLAMQNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSA 300 FIAIGHKPNTSIFEGQL+MQNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSA Sbjct: 241 FIAIGHKPNTSIFEGQLSMQNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSA 300 Query: 301 GTGCMAALDAQRYLEGLE 318 GTGCMAALDAQRYLEGLE Sbjct: 301 GTGCMAALDAQRYLEGLE 318 >gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase subunit F [Herbaspirillum seropedicae SmR1] Length = 533 Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 24/282 (8%) Query: 42 GGQLMTTTDVENWPGDPLGVQ---GPELMQRLLQHAERFKTEIIFDH-----IHTTKLSE 93 GGQ++ T +EN+ + VQ GP+ L QH + + +I+ + KL E Sbjct: 248 GGQVLDTLAIENF----ISVQETEGPQFATALEQHVKAYDVDIMNVQRAEALVPGDKLIE 303 Query: 94 RPFRLIGDSGEYTADALIIATGASAQYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVV 153 + + G +I++TGA + + +P EQ + +GV+ C CDG ++GK V+V+ Sbjct: 304 VK---LANGGVLKGKTVILSTGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVI 360 Query: 154 GGGNTAVEEALYLSNIASKVTIIHRRDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVV 213 GGGN+ VE A+ L+ I + VT+I + +A+ +L+ +L S + I E+ Sbjct: 361 GGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLK---SLPNVTIVTSAQTTEIT 417 Query: 214 GDDSGVTGIKIKSTQDDAITEIPVHGLFIAIGHKPNTSIFEGQLAM-QNGYLKTRTGTEG 272 GD V GI K + I +P+ G+F+ IG PNT +G LA+ ++G ++ + Sbjct: 418 GDGQRVNGISYKERETGEIKHVPLEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDAKGQ- 476 Query: 273 FATATSIDGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRYL 314 TSI GVFAAGDV Y+Q + + G G AAL A +L Sbjct: 477 ----TSIPGVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHL 514 >gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 357 Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 78/313 (24%), Positives = 139/313 (44%), Gaps = 34/313 (10%) Query: 8 AKVLILGSGPAG----YSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQG 63 A +I+G+GP G + + +A++ L Q +L + + P P+ G Sbjct: 16 ADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPDKPIYDIPAVPV-CTG 74 Query: 64 PELMQRLLQHAERFKTEIIFDHIHTTKLSERP---FRLIGDSG-EYTADALIIATGASA- 118 EL LL+ E F T +++R F + +G ++ + IA G + Sbjct: 75 QELTDNLLKQIEPFSPTFHLGQ-EVTLVNKREDGRFDVETSTGTKFITKTIFIAAGVGSF 133 Query: 119 --QYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTII 176 + L + + F G V D + GK + + GGG++A++ AL A V ++ Sbjct: 134 QPRTLKVEGIEQFEGSQVFYRVK-DPALFEGKNIVICGGGDSALDWALNFVGKAESVILL 192 Query: 177 HRRDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIK------IKSTQDD 230 HRR++FRA P + ++ ++ Q+ L ++G +G T IK +K T D Sbjct: 193 HRREEFRAAPASVAKM------KELCEQYEMQL--LIGQVTG-TEIKDGKLAEVKVTGAD 243 Query: 231 AIT-EIPVHGLFIAIGHKPNT-SIFEGQLAMQNGYLKTRTGTEGFATATSIDGVFAAGDV 288 +T +P+ L + G P I E L ++ LK TE F T++ G+FA GD+ Sbjct: 244 GVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKV-MDTEKF--ETNVPGIFAVGDI 300 Query: 289 QDHVYRQAITSAG 301 + ++ + +G Sbjct: 301 NTYPGKKKLILSG 313 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 967,353 Number of extensions: 40609 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 3 Length of query: 318 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 233 Effective length of database: 1,217,395 Effective search space: 283653035 Effective search space used: 283653035 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)