BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0094.p
         (417 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311224|ref|YP_003775316.1| DNA repair photolyase [Herbaspi...   839   0.0  

>gi|300311224|ref|YP_003775316.1| DNA repair photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/417 (98%), Positives = 412/417 (98%)

Query: 1   VASFPKFPQGIAQPFPIQPTPTAEDDPTLTPATFIHRSQVAKKGRGAVTNLRGRYEQVSR 60
           +ASFPKFPQGIAQPFP QP PTAEDDPTLTPATFIHRSQVA+KGRGAVTNLRGRYE VSR
Sbjct: 1   MASFPKFPQGIAQPFPTQPAPTAEDDPTLTPATFIHRSQVAQKGRGAVTNLRGRYESVSR 60

Query: 61  EEFDDGWQPMRWAEEEGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPY 120
           EEFDDGWQPMRWAE EGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPY
Sbjct: 61  EEFDDGWQPMRWAEGEGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNPY 120

Query: 121 RGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGIN 180
           RGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGIN
Sbjct: 121 RGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGIN 180

Query: 181 TDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTIT 240
           TDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTIT
Sbjct: 181 TDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTIT 240

Query: 241 TLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEA 300
           TLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEA
Sbjct: 241 TLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVEA 300

Query: 301 GARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTG 360
           GARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTG
Sbjct: 301 GARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGTG 360

Query: 361 VWADLLQQRFEKASRSLGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDLF 417
           VWADLLQQRFEKASR LGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDLF
Sbjct: 361 VWADLLQQRFEKASRRLGIHHRNRAFATLDASCFKRPQWAPQAPRQPARSDGQMDLF 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,280,641
Number of extensions: 53210
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,203,190
Effective search space: 395849510
Effective search space used: 395849510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)