BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0087.p
         (380 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311218|ref|YP_003775310.1| hypothetical protein Hsero_1893...   781   0.0  

>gi|300311218|ref|YP_003775310.1| hypothetical protein Hsero_1893
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/380 (99%), Positives = 379/380 (99%)

Query: 1   MDYRTRIVSSLAEIGQARWDALVATQEEGNPFLSYAFLHALHESGSASAESGWEPHYLTL 60
           MDYRTRIVSSLAEIGQARWDALVATQEEGNPFLSYAFLHALHESGSASAESGWEPHYLTL
Sbjct: 20  MDYRTRIVSSLAEIGQARWDALVATQEEGNPFLSYAFLHALHESGSASAESGWEPHYLTL 79

Query: 61  WQDEALAAALPLYRKFHSYGEYVFDWAWAEAYQRHGVEYYPKLLSAIPFTPVRGARLMAI 120
           WQDE+LAAALPLYRKFHSYGEYVFDWAWAEAYQRHGVEYYPKLLSAIPFTPVRGARLMAI
Sbjct: 80  WQDESLAAALPLYRKFHSYGEYVFDWAWAEAYQRHGVEYYPKLLSAIPFTPVRGARLMAI 139

Query: 121 DETARAALLEALQRLQQQGQHSSTHILYPPEQQAGQLAEAGFLLRSGVQFHWHNEGYGSF 180
           DETAR ALLEALQRLQQQGQHSSTHILYPPEQQAGQLAEAGFLLRSGVQFHWHNEGYGSF
Sbjct: 140 DETARVALLEALQRLQQQGQHSSTHILYPPEQQAGQLAEAGFLLRSGVQFHWHNEGYGSF 199

Query: 181 ADFVDTLDRKKRKNILAERRKVAEQGVRFVWLRGAEITDAHWRFFNRCYRHTYAAHYSTP 240
           ADFVDTLDRKKRKNILAERRKVAEQGVRFVWLRGAEITDAHWRFFNRCYRHTYAAHYSTP
Sbjct: 200 ADFVDTLDRKKRKNILAERRKVAEQGVRFVWLRGAEITDAHWRFFNRCYRHTYAAHYSTP 259

Query: 241 YLNLDFFRRIGATMPQHLLLTVALRGEEPIASSLTVHDADTLYGRYWGALEHVPCLHFET 300
           YLNLDFFRRIGATMPQHLLLT+ALRGEEPIASSLTVHDADTLYGRYWGALEHVPCLHFET
Sbjct: 260 YLNLDFFRRIGATMPQHLLLTLALRGEEPIASSLTVHDADTLYGRYWGALEHVPCLHFET 319

Query: 301 AYYQPLEFCIAEKISWFEGGAQGEHKMARGFLPQKTWSAHWLAHPGFYDAVEHFLSRESN 360
           AYYQPLEFCIAEKISWFEGGAQGEHKMARGFLPQKTWSAHWLAHPGFYDAVEHFLSRESN
Sbjct: 320 AYYQPLEFCIAEKISWFEGGAQGEHKMARGFLPQKTWSAHWLAHPGFYDAVEHFLSRESN 379

Query: 361 GIDGYISELNEHNPFRDPPR 380
           GIDGYISELNEHNPFRDPPR
Sbjct: 380 GIDGYISELNEHNPFRDPPR 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,215,293
Number of extensions: 49034
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,207,925
Effective search space: 353922025
Effective search space used: 353922025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)