BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0078.p (1068 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbasp... 1618 0.0 gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribo... 263 6e-71 >gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1] Length = 1062 Score = 1618 bits (4190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1054/1068 (98%), Positives = 1056/1068 (98%), Gaps = 9/1068 (0%) Query: 1 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 60 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 63 Query: 61 RHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAG 120 RHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAG Sbjct: 64 RHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAG 123 Query: 121 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQWDL 180 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQWDL Sbjct: 124 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQWDL 183 Query: 181 NYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFM 240 NYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFM Sbjct: 184 NYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFM 243 Query: 241 AHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVN 300 AHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVN Sbjct: 244 AHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVN 303 Query: 301 SARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKD 360 SARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKD Sbjct: 304 SARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKD 363 Query: 361 ALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLR 420 ALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLR Sbjct: 364 ALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLR 423 Query: 421 IIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPHYKM 480 IIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPHYKM Sbjct: 424 IIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPHYKM 483 Query: 481 ERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIVERK 540 ERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIVERK Sbjct: 484 ERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIVERK 543 Query: 541 APEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGRGGD 600 APEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGRGGD Sbjct: 544 APEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGRGGD 603 Query: 601 RNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAGEAAEGKQVRAPRPPREPKE 660 RNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAG+AAEGKQVRAPRPPREPKE Sbjct: 604 RNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAGDAAEGKQVRAPRPPREPKE 663 Query: 661 GREPREPRELQAQARDGQEVKEARRNEPREAREPREAREPREGREPREGREPRAPRAPRG 720 GREPREPRELQAQARDGQEVKE RRNEPREAREPRE REGREPREGREPRAPRAPRG Sbjct: 664 GREPREPRELQAQARDGQEVKETRRNEPREAREPREG---REGREPREGREPRAPRAPRG 720 Query: 721 ERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIASDEAATQVEAAQVEAGEAGEGAETAE 780 ERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIASDEAATQVEAAQVEAGEAGEGAETAE Sbjct: 721 ERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIASDEAATQVEAAQVEAGEAGEGAETAE 780 Query: 781 GATEPRRRRRRGGRNRHRRERDENGNLIDNAEAGDSAEGDAAETADAAETAEGAEAAIPA 840 GATEPRRRRRRGGRNRHRRERDENGNLIDNAEAGDSAEGDAAETA+ AEAAIPA Sbjct: 781 GATEPRRRRRRGGRNRHRRERDENGNLIDNAEAGDSAEGDAAETAEG------AEAAIPA 834 Query: 841 FVPVADAAAASAQAAVAQASFAASPVPAAEDAPVAESAAKVESGVNSVEAVAAAAAEATE 900 FVPVADAAAASAQAAVAQASFAASPVPAAEDAPVAESAAKVESGVNSVEAVAAAAAEATE Sbjct: 835 FVPVADAAAASAQAAVAQASFAASPVPAAEDAPVAESAAKVESGVNSVEAVAAAAAEATE 894 Query: 901 AVFSHQPAIEPVAPSIDASFAPAPVEAAVQAPAQAPAASEAPVEVVPVVAAEPVAAPAPV 960 AVFSHQPAIEPVAPSIDASFAPAPVEAAVQAPAQAPAASEAPVEVVPVVAAEPVAAPAPV Sbjct: 895 AVFSHQPAIEPVAPSIDASFAPAPVEAAVQAPAQAPAASEAPVEVVPVVAAEPVAAPAPV 954 Query: 961 VQQQISLLDAVEAAPVVASAPAAPAAPAAPAPQAAPAPAQAAGNGAQWDSLQQMLSQAGL 1020 VQQQISLLDAVEAAPVVASAPAAPAAPAAPAPQAAPAPAQAAGNGAQWDSLQQMLSQAGL Sbjct: 955 VQQQISLLDAVEAAPVVASAPAAPAAPAAPAPQAAPAPAQAAGNGAQWDSLQQMLSQAGL 1014 Query: 1021 TLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQVETRR 1068 TLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQVETRR Sbjct: 1015 TLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQVETRR 1062 >gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 263 bits (672), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 158/453 (34%), Positives = 252/453 (55%), Gaps = 6/453 (1%) Query: 1 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 60 +L N T QE RVA++ + ++ IE T NIY G + R+ P +++ F++ G E Sbjct: 5 ILINITPQET-RVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDIGLE 63 Query: 61 RHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAG 120 R FL ++ + +G + I++ L +GQ I VQV K+ G KGA L++ IS+AG Sbjct: 64 RAAFLHVADIWEARSHDGQNTPAIPIEKLLHDGQSITVQVIKDPIGTKGARLSTQISIAG 123 Query: 121 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLP---NGMSVIARTAGIGRNVDELQ 177 R LV +P + + G+S+R+E E +EL + + LP G +I A + D LQ Sbjct: 124 RMLVYLPQD-KHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAEDASDAD-LQ 181 Query: 178 WDLNYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 237 D+ YL + W I G++ L++Q+ SL R +RD+ I +D+ + Q Sbjct: 182 MDVEYLRKTWATIVKQGKTNPAPTLLHQDLSLAQRVLRDFVGDHTATIQVDSRENFHMLQ 241 Query: 238 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 297 +F A P ++ ++ YR + PLF + +E +IE A R V L SGG +++D TEA+ ++ Sbjct: 242 EFGAIYTPSVLTKLTHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTI 301 Query: 298 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 357 DVN+ G + + T F TNLEAA +ARQLRLR+LGG+I++DFIDME++++++ V Sbjct: 302 DVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEHRQAVLAE 361 Query: 358 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 417 L AL DR ++ + S GL+E++R+R R SL+ TCP C G G ++ + + Sbjct: 362 LGKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKTPRTVCYE 421 Query: 418 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEK 450 +LR + EA + N + A V L E+ Sbjct: 422 ILREVMREAKQFNPREFRILASQVVVDMFLEEE 454 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,897,822 Number of extensions: 67262 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 6 Length of query: 1068 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 973 Effective length of database: 1,170,045 Effective search space: 1138453785 Effective search space used: 1138453785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 136 (57.0 bits)