BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0077.p
         (393 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesi...   801   0.0  
gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesi...   211   7e-56

>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis
           protein A [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/393 (99%), Positives = 391/393 (99%)

Query: 1   MIVHLRRIASRAIVTHLLPPASMNQRVIPIVDYRQAFPANEAGRLAPMAVQPTGWLSDSL 60
           MIVHLRRIASRAIVTHLLPPASMNQRVIPIVDYRQAFPA+EAGRLAPMAVQPTGWLSDSL
Sbjct: 1   MIVHLRRIASRAIVTHLLPPASMNQRVIPIVDYRQAFPASEAGRLAPMAVQPTGWLSDSL 60

Query: 61  GRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRK 120
           GRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRK
Sbjct: 61  GRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRK 120

Query: 121 IRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKRVTV 180
           IRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKRVTV
Sbjct: 121 IRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKRVTV 180

Query: 181 SLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMARYF 240
           SLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMARYF
Sbjct: 181 SLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMARYF 240

Query: 241 KGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVVLLIATEMPLEVADPNYTGETAERWRYA 300
           KGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVV LIATEMPLEVADPNYTGETAERWRY 
Sbjct: 241 KGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVVRLIATEMPLEVADPNYTGETAERWRYV 300

Query: 301 DGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAEIAGAI 360
           DGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAEIAGAI
Sbjct: 301 DGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAEIAGAI 360

Query: 361 AALWGQRGDRYSELRSALREAPLRKVEMSYIGG 393
           AALWGQRGDRYSELRSALREAPLRKVEMSYIGG
Sbjct: 361 AALWGQRGDRYSELRSALREAPLRKVEMSYIGG 393


>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis
           enzyme A protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  211 bits (538), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 187/346 (54%), Gaps = 17/346 (4%)

Query: 49  AVQPTGWLSDSLGRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTR 108
           +  P   L D  GR +  LRISVTDRC+ RC YC+PK        F    + L F+E++R
Sbjct: 4   STHPPAVLQDRFGRRISYLRISVTDRCDLRCSYCLPKG----HTGFEEPQNWLRFDEISR 59

Query: 109 VAAQFVAHGVRKIRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQ 168
           V A F   G  ++RLTGGEPLLR+ + TL   L+AL   ++    L+L+TN T L + A 
Sbjct: 60  VVAAFARLGAGRVRLTGGEPLLRRGLATLAAQLSALPGVDE----LSLSTNATQLHKHAA 115

Query: 169 ALKDAGLKRVTVSLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGV 228
           +L+ AG++R+ VSLDSLD      +   D  +A V+ G++AA AAG  P+KINMV+ +GV
Sbjct: 116 SLRAAGVQRINVSLDSLDRACSASITGRD-SLASVMSGLEAAKAAGFAPIKINMVLLRGV 174

Query: 229 NDDQILPMARYFKGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVVLLIATEMPLEVADPN 288
           N+ ++  MA++      ILR IE M +G++   R    L    +   +     L      
Sbjct: 175 NEQEVPQMAQFCFEHGFILRLIETMPMGATG--RSSPALELGPLREALVARFGLRPLAAE 232

Query: 289 YTGETAERWRYADGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVR 348
             G  A  W   DG   IG IS ++Q FC  C+R RLS +G +Y CL   E  +LR ++R
Sbjct: 233 LGGGPARYWSTPDGRSTIGFISPISQHFCATCNRVRLSVDGTLYLCLGQEERFELRPLLR 292

Query: 349 SGGSDAEIAGAIAALWGQRGDRYSELRSALREAPLRKVE-MSYIGG 393
           +G  DA +  AI A    + +R+        EAP + V  MS  GG
Sbjct: 293 AGIDDAGLESAIRAAIELKPERHE-----FNEAPQKIVRFMSQTGG 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,257,036
Number of extensions: 54008
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,207,925
Effective search space: 369625050
Effective search space used: 369625050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)