BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0075.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   833   0.0  
gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   243   2e-65

>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/428 (97%), Positives = 419/428 (97%)

Query: 1   MTHPSLNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSR 60
           MT PSLNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSR
Sbjct: 1   MTLPSLNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSR 60

Query: 61  IDVPAHDNSAMDGYALRGEDLVEDRELRLQIIGAVHAGDRFMGQVGAGQCVRIMTGAPMP 120
           IDVPAHDNSAMDGYALRGEDL E RELRLQIIG VHAGDRF GQVG GQCVRIMTGAPMP
Sbjct: 61  IDVPAHDNSAMDGYALRGEDLAEGRELRLQIIGEVHAGDRFTGQVGPGQCVRIMTGAPMP 120

Query: 121 TGCDTVIPQELTVDADQSAVTVPPGRVRAGDNRRLRGEDLALGSVALPRGRLLRPSDIGL 180
            GCDTVIPQELTVDADQSAVTVPPGRVRAGDNRRLRGEDLALGSVALPRGR+LRPSDIGL
Sbjct: 121 AGCDTVIPQELTVDADQSAVTVPPGRVRAGDNRRLRGEDLALGSVALPRGRILRPSDIGL 180

Query: 181 LASLGLAEAPVQRRLRVAFFSTGDELRSVGERLDEGCVYDSNRYTLHGMLTRLGCEVLDM 240
           LASLGLAEAPVQRRLRVAFFSTGDELRSVGE LDEGCVYDSNRYTLHGMLTRLGCEVLDM
Sbjct: 181 LASLGLAEAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLDM 240

Query: 241 GVVPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRP 300
           GVVPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRP
Sbjct: 241 GVVPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRP 300

Query: 301 LAFGRIRSRGRQAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVKSTTAIR 360
           LAFGRIRSRGR+AYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVK+ TAIR
Sbjct: 301 LAFGRIRSRGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVKTATAIR 360

Query: 361 KKAGRTEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVA 420
           KKAGRTEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVA
Sbjct: 361 KKAGRTEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVA 420

Query: 421 VVLFDGLV 428
           VVLFDGLV
Sbjct: 421 VVLFDGLV 428


>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 164/401 (40%), Positives = 224/401 (55%), Gaps = 21/401 (5%)

Query: 36  PIEAVEKLPIRSALSRVLAQDIVSRIDVPAHDNSAMDGYALRGEDLVEDRELRLQIIGAV 95
           P+   E +    A  RVLA+ + + IDVP  DNS MDGYA+R  D     + RL++   +
Sbjct: 37  PVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYAVRAADCASG-QARLRVSQRI 95

Query: 96  HAGDRFMGQ-VGAGQCVRIMTGAPMPTGCDTVIPQE-LTVDADQSAVTVPPGRVRAGDNR 153
            AG   +GQ +  G   RI TGA MP G D V+ QE    D +   +   P    AG+  
Sbjct: 96  PAGH--VGQPLEPGTAARIFTGAMMPAGADAVVMQEACEADGEHVVIRHVPA---AGEWV 150

Query: 154 RLRGEDLALGSVALPRGRLLRPSDIGLLASLGLAEAPVQRRLRVAFFSTGDELRSVGERL 213
           R  GED+  GS  L  G  LRP ++GL AS+G A+  V RR+RVA F TGDEL   G+ L
Sbjct: 151 RTIGEDIRQGSTILAAGTRLRPQELGLAASIGQAQLQVLRRVRVAVFFTGDELTMPGQPL 210

Query: 214 DEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPDDPAALEAAFRSACEEADAVITSGGVSVG 273
             G +Y+SNR+ L G+L +LGC+V D G+VPD   A     R A  E D +ITSGGVSVG
Sbjct: 211 KPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLREAAREHDLIITSGGVSVG 270

Query: 274 AADYTKQIMASLGEMAFWKIAMRPGRPLAFGRIRSRGR---QAYLFGLPGNPVAVTVSFS 330
             D+ K  + + G +  W+IAM+PG+PLAFG++R RG    +A+  GLPGNPV+  V+F 
Sbjct: 271 EEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVR-RGEGTGEAFFMGLPGNPVSSFVTFL 329

Query: 331 FFVRDALLRLAGAEAKPLPRLRV-KSTTAIRKKAG--RTEYQRGILAPDDSGNWSVRLTG 387
            FVR  LLRL G     LPR  V     A+R      R + ++  L    +    + L  
Sbjct: 330 LFVRPFLLRLQG-----LPREAVLPQAVALRADFDWPRADRRQEFLRVRRNAQGGLDLFP 384

Query: 388 MQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLFDGLV 428
            QGS +L S + A+ +I+    +  +AAG+ V  + FD L+
Sbjct: 385 SQGSAVLTSTAWADGLIDNPPGQ-TIAAGDMVQFLAFDHLL 424


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,386,291
Number of extensions: 63134
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)