BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0074.p
         (488 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881...   908   0.0  

>gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/455 (99%), Positives = 452/455 (99%)

Query: 34  MLEHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMGSVASL 93
           ML HMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQM SVASL
Sbjct: 1   MLAHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMASVASL 60

Query: 94  QNQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALT 153
           QNQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALT
Sbjct: 61  QNQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALT 120

Query: 154 ESNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLD 213
           ESNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLD
Sbjct: 121 ESNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLD 180

Query: 214 KVHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGS 273
           KVHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGS
Sbjct: 181 KVHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGS 240

Query: 274 GERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVR 333
           GERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVR
Sbjct: 241 GERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVR 300

Query: 334 TEARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSAL 393
           TEARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSAL
Sbjct: 301 TEARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSAL 360

Query: 394 LNSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTR 453
           LNSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTR
Sbjct: 361 LNSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTR 420

Query: 454 QMTRKLKSVEALPADAAQKLLGAAEPELGESDEGL 488
           QMTRKLKSVEALPADAAQKLLGAAEPELGESDE L
Sbjct: 421 QMTRKLKSVEALPADAAQKLLGAAEPELGESDEAL 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,233,248
Number of extensions: 44751
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,198,455
Effective search space: 478183545
Effective search space used: 478183545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)