BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0068.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...   442   e-126
gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...    60   1e-10
gi|300311136|ref|YP_003775228.1| threonine efflux protein [Herba...    54   9e-09

>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  442 bits (1138), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MDYQTWFAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAG 60
           MDYQTWFAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAG
Sbjct: 1   MDYQTWFAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAG 60

Query: 61  VGSLLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWW 120
           VGSLLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWW
Sbjct: 61  VGSLLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWW 120

Query: 121 QRCMTGFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHGYAFAA 180
           QRCMTGFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHGYAFAA
Sbjct: 121 QRCMTGFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHGYAFAA 180

Query: 181 SRLQRFFRSQKAIRAQNRFFGGVLMLVGAGLFFFKRTQH 219
           SRLQRFFRSQKAIRAQNRFFGGVLMLVGAGLFFFKRTQH
Sbjct: 181 SRLQRFFRSQKAIRAQNRFFGGVLMLVGAGLFFFKRTQH 219


>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 9/195 (4%)

Query: 9   FFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLVAS 68
           F  AA  + ++PG   +  ++ G+  G +       G    LV   ++A  G  +L+ A 
Sbjct: 7   FLLAAMTLTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFAALIKAY 66

Query: 69  ETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTGFL 128
             A++ ++ AGA YL YLG    R+   S     A D   A+A    R+ +WQ      L
Sbjct: 67  PPAYHALQYAGAAYLAYLGVRTLRSA--SAGLALAADGQGAAA-VPLRRIYWQSV----L 119

Query: 129 TNATNPKGIVFMVAVLPQFIDHDRPLW-LQLLVLAVTMVAVDLVVMHGYAFAASRLQRFF 187
            N  NPK  +F +A LPQF+  +     LQ+LVLA+  +     +    A  +  +  +F
Sbjct: 120 ANMLNPKVTLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGAYF 179

Query: 188 RSQKAIRAQ-NRFFG 201
           R + +     NR  G
Sbjct: 180 RRRASASVHLNRLAG 194


>gi|300311136|ref|YP_003775228.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score = 53.9 bits (128), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 17/187 (9%)

Query: 4   QTWFAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGS 63
           +T     + A V +I+PG   ++  S G+ +G RR+   +LG+     V+L +   G+G 
Sbjct: 3   ETLLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHMLGITFGFGVLLALCAFGIGE 62

Query: 64  LLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRC 123
           L++A      ++K  G  YL+YL    W+ R         +  A A  RA    ++    
Sbjct: 63  LVIAVPQLVLLLKAMGCAYLLYLA---WQLR--------RMGVAGAGERAAQPMSFGAAA 111

Query: 124 MTGFLTNATNPKGIVFMVAVLPQFID--HDRPLWLQLLVLAVTMVAVDLVVMHGYAFAAS 181
           +  F     NPK  V  V     F+   H  P  L +LV  +   A++L  +  +A A +
Sbjct: 112 LFQF----ANPKAWVMAVTGASAFMPMLHKLPGALAILVYCLVFCAINLPCVSVWAGAGA 167

Query: 182 RLQRFFR 188
            L+R+  
Sbjct: 168 VLRRYLE 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,351
Number of extensions: 15281
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 4
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)