BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0062.p
         (463 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311195|ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herb...   953   0.0  

>gi|300311195|ref|YP_003775287.1| cysteinyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 463

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/463 (99%), Positives = 462/463 (99%)

Query: 1   MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60
           MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG
Sbjct: 1   MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60

Query: 61  YEVTYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYV 120
           YEVTYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYV
Sbjct: 61  YEVTYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYV 120

Query: 121 PQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180
           PQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP
Sbjct: 121 PQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180

Query: 181 LDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240
           LDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH
Sbjct: 181 LDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240

Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300
           ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR
Sbjct: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300

Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVADEAHALRLADALNDDFNTPV 360
           AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVADEAHA+RLADALNDDFNTPV
Sbjct: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVADEAHAVRLADALNDDFNTPV 360

Query: 361 AIAVLFELANEVNRSRSPAQARQLKALAGILGLLQREPGEYLKGGVAAAEGLGEAEIEAL 420
           AIAVLFELANEVNRSRSP QARQLKALAGILGLLQREPGEYLKGGVAAAEGLGEAEIEAL
Sbjct: 361 AIAVLFELANEVNRSRSPVQARQLKALAGILGLLQREPGEYLKGGVAAAEGLGEAEIEAL 420

Query: 421 IAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGGLTEWRRA 463
           IAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGGLTEWRRA
Sbjct: 421 IAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGGLTEWRRA 463


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,400,499
Number of extensions: 56734
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 374
Effective length of database: 1,198,455
Effective search space: 448222170
Effective search space used: 448222170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)