BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0061.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311194|ref|YP_003775286.1| signal peptide protein [Herbasp...   277   7e-76

>gi|300311194|ref|YP_003775286.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 539

 Score =  277 bits (708), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 187/188 (99%), Positives = 188/188 (100%)

Query: 78  LLAQKDKEQAEKLAREQAARAEKEKAAQAAADKARADKLAAAEKAKADKLAAAEKAKADK 137
           LLAQKDKEQAEKLAREQAARAEKEKAAQAAADKA+ADKLAAAEKAKADKLAAAEKAKADK
Sbjct: 352 LLAQKDKEQAEKLAREQAARAEKEKAAQAAADKAKADKLAAAEKAKADKLAAAEKAKADK 411

Query: 138 ARADKEKAKEQASAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWA 197
           ARADKEKAKEQASAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWA
Sbjct: 412 ARADKEKAKEQASAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWA 471

Query: 198 EERRARIEDKGRISVKVSNATVSINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWL 257
           EERRARIEDKGRISVKVSNATVSINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWL
Sbjct: 472 EERRARIEDKGRISVKVSNATVSINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWL 531

Query: 258 IKQERSGG 265
           IKQERSGG
Sbjct: 532 IKQERSGG 539


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.121    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 416,716
Number of extensions: 12888
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 129 (54.3 bits)