BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0059.p
         (361 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868...   743   0.0  

>gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/361 (99%), Positives = 360/361 (99%)

Query: 1   LIDIYKDLGANRLREAQAKADALVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPAD 60
           LIDIYKDLGANRLREAQAKADALVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPAD
Sbjct: 39  LIDIYKDLGANRLREAQAKADALVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPAD 98

Query: 61  KLKELRDEAMVRIRSLQEKPDPNLIPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELK 120
           KLKELRDEAMVRIRSLQEKPDPNLIPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELK
Sbjct: 99  KLKELRDEAMVRIRSLQEKPDPNLIPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELK 158

Query: 121 FQTDFYISQGRFGANKSKSGDQRTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKR 180
           FQTDFYISQGRFGANKSKSGDQRTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKR
Sbjct: 159 FQTDFYISQGRFGANKSKSGDQRTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKR 218

Query: 181 NGRSGYGIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVD 240
           NGRSGYGIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVD
Sbjct: 219 NGRSGYGIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVD 278

Query: 241 KNEWARQRDAASAILEQWVQSLENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGA 300
           KNEWARQRDAASAILEQW QSLENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGA
Sbjct: 279 KNEWARQRDAASAILEQWGQSLENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGA 338

Query: 301 RYTSVKLRDVSLFRYPGTPEDMIVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGN 360
           RYTSVKLRDVSLFRYPGTPEDMIVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGN
Sbjct: 339 RYTSVKLRDVSLFRYPGTPEDMIVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGN 398

Query: 361 A 361
           A
Sbjct: 399 A 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,211,746
Number of extensions: 52479
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,212,660
Effective search space: 333481500
Effective search space used: 333481500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)